==44546== Memcheck, a memory error detector ==44546== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==44546== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==44546== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==44546== Parent PID: 25496 ==44546== ==44546== Warning: invalid file descriptor -1 in syscall close() ==44546== ==44546== FILE DESCRIPTORS: 9 open (3 std) at exit. ==44546== Open file descriptor 12: ==44546== at 0xC15E0BD: pipe (pipe.c:29) ==44546== by 0x1438A07D: ??? ==44546== by 0x1008B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44546== by 0xBA66418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44546== by 0xB9FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44546== by 0x826CD38: PetscInitialize (pinit.c:924) ==44546== by 0xB92F56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44546== by 0xB92F5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44546== by 0x14A1CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44546== by 0x14186D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44546== by 0x144A60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44546== by 0x144900: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44546== by 0x144F97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44546== by 0x13FC45: main (TestMonodomainProblem.cpp:19) ==44546== ==44546== Open file descriptor 8: /dev/shm/open_mpi.0000 ==44546== at 0xC162A5C: __open_nocancel (open64_nocancel.c:39) ==44546== by 0xC0E6B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==44546== by 0x8111822: ??? ==44546== by 0x811196F: ??? ==44546== by 0x101306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44546== by 0x10130938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44546== by 0x100E6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44546== by 0x1008B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44546== by 0xBA66418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44546== by 0xB9FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44546== by 0x826CD38: PetscInitialize (pinit.c:924) ==44546== by 0xB92F56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44546== by 0xB92F5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44546== by 0x14A1CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44546== by 0x14186D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44546== by 0x144A60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44546== by 0x144900: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44546== by 0x144F97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44546== by 0x13FC45: main (TestMonodomainProblem.cpp:19) ==44546== ==44546== Open file descriptor 145: ==44546== ==44546== ==44546== Open file descriptor 142: ==44546== ==44546== ==44546== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==44546== ==44546== ==44546== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==44546== ==44546== ==44546== ==44546== HEAP SUMMARY: ==44546== in use at exit: 35,606 bytes in 295 blocks ==44546== total heap usage: 6,600,819 allocs, 6,600,524 frees, 2,686,284,125 bytes allocated ==44546== ==44546== LEAK SUMMARY: ==44546== definitely lost: 0 bytes in 0 blocks ==44546== indirectly lost: 0 bytes in 0 blocks ==44546== possibly lost: 0 bytes in 0 blocks ==44546== still reachable: 24 bytes in 2 blocks ==44546== suppressed: 35,582 bytes in 293 blocks ==44546== Reachable blocks (those to which a pointer was found) are not shown. ==44546== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==44546== ==44546== For lists of detected and suppressed errors, rerun with: -s ==44546== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31)