==27868== Memcheck, a memory error detector ==27868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27868== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==27868== Parent PID: 25496 ==27868== ==27868== ==27868== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27868== Open file descriptor 12: ==27868== at 0x10E190BD: pipe (pipe.c:29) ==27868== by 0x196F607D: ??? ==27868== by 0x14CA34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27868== by 0x1097F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27868== by 0x10918D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27868== by 0xF60FD38: PetscInitialize (pinit.c:924) ==27868== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27868== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27868== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27868== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27868== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27868== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27868== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27868== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==27868== ==27868== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27868== at 0x10E1DA5C: __open_nocancel (open64_nocancel.c:39) ==27868== by 0x10DA1B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27868== by 0xF171822: ??? ==27868== by 0xF17196F: ??? ==27868== by 0x14D486DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27868== by 0x14D48938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27868== by 0x14CFE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27868== by 0x14CA32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27868== by 0x1097F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27868== by 0x10918D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27868== by 0xF60FD38: PetscInitialize (pinit.c:924) ==27868== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27868== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27868== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27868== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27868== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27868== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27868== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27868== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==27868== ==27868== Open file descriptor 145: ==27868== ==27868== ==27868== Open file descriptor 142: ==27868== ==27868== ==27868== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==27868== ==27868== ==27868== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27868== ==27868== ==27868== ==27868== HEAP SUMMARY: ==27868== in use at exit: 35,215 bytes in 290 blocks ==27868== total heap usage: 864,949 allocs, 864,659 frees, 176,668,146 bytes allocated ==27868== ==27868== LEAK SUMMARY: ==27868== definitely lost: 0 bytes in 0 blocks ==27868== indirectly lost: 0 bytes in 0 blocks ==27868== possibly lost: 0 bytes in 0 blocks ==27868== still reachable: 56 bytes in 3 blocks ==27868== suppressed: 35,159 bytes in 287 blocks ==27868== Reachable blocks (those to which a pointer was found) are not shown. ==27868== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27868== ==27868== For lists of detected and suppressed errors, rerun with: -s ==27868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)