==28128== Memcheck, a memory error detector ==28128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28128== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==28128== Parent PID: 25496 ==28128== ==28128== ==28128== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28128== Open file descriptor 12: ==28128== at 0xF9200BD: pipe (pipe.c:29) ==28128== by 0x196F607D: ??? ==28128== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28128== by 0x1021B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28128== by 0x101B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28128== by 0x103A2D38: PetscInitialize (pinit.c:924) ==28128== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28128== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28128== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28128== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28128== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28128== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28128== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28128== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==28128== ==28128== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28128== at 0xF924A5C: __open_nocancel (open64_nocancel.c:39) ==28128== by 0xF8A8B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28128== by 0xF171822: ??? ==28128== by 0xF17196F: ??? ==28128== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28128== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28128== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28128== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28128== by 0x1021B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28128== by 0x101B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28128== by 0x103A2D38: PetscInitialize (pinit.c:924) ==28128== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28128== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28128== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28128== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28128== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28128== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28128== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28128== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==28128== ==28128== Open file descriptor 145: ==28128== ==28128== ==28128== Open file descriptor 142: ==28128== ==28128== ==28128== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==28128== ==28128== ==28128== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28128== ==28128== ==28128== ==28128== HEAP SUMMARY: ==28128== in use at exit: 35,142 bytes in 286 blocks ==28128== total heap usage: 6,446,568 allocs, 6,446,282 frees, 7,676,213,860 bytes allocated ==28128== ==28128== LEAK SUMMARY: ==28128== definitely lost: 0 bytes in 0 blocks ==28128== indirectly lost: 0 bytes in 0 blocks ==28128== possibly lost: 0 bytes in 0 blocks ==28128== still reachable: 56 bytes in 3 blocks ==28128== suppressed: 35,086 bytes in 283 blocks ==28128== Reachable blocks (those to which a pointer was found) are not shown. ==28128== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28128== ==28128== For lists of detected and suppressed errors, rerun with: -s ==28128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)