==28013== Memcheck, a memory error detector ==28013== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28013== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28013== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==28013== Parent PID: 25496 ==28013== ==28013== ==28013== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28013== Open file descriptor 12: ==28013== at 0xF9640BD: pipe (pipe.c:29) ==28013== by 0x196F607D: ??? ==28013== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28013== by 0x1025D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28013== by 0x101F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28013== by 0x103A2D38: PetscInitialize (pinit.c:924) ==28013== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28013== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28013== by 0x213584: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28013== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28013== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28013== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28013== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28013== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==28013== ==28013== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28013== at 0xF968A5C: __open_nocancel (open64_nocancel.c:39) ==28013== by 0xF8ECB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28013== by 0xF171822: ??? ==28013== by 0xF17196F: ??? ==28013== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28013== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28013== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28013== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28013== by 0x1025D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28013== by 0x101F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28013== by 0x103A2D38: PetscInitialize (pinit.c:924) ==28013== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28013== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28013== by 0x213584: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28013== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28013== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28013== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28013== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28013== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==28013== ==28013== Open file descriptor 145: ==28013== ==28013== ==28013== Open file descriptor 142: ==28013== ==28013== ==28013== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==28013== ==28013== ==28013== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28013== ==28013== ==28013== ==28013== HEAP SUMMARY: ==28013== in use at exit: 35,174 bytes in 287 blocks ==28013== total heap usage: 18,056,161 allocs, 18,055,874 frees, 28,814,145,524 bytes allocated ==28013== ==28013== LEAK SUMMARY: ==28013== definitely lost: 0 bytes in 0 blocks ==28013== indirectly lost: 0 bytes in 0 blocks ==28013== possibly lost: 0 bytes in 0 blocks ==28013== still reachable: 88 bytes in 4 blocks ==28013== suppressed: 35,086 bytes in 283 blocks ==28013== Reachable blocks (those to which a pointer was found) are not shown. ==28013== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28013== ==28013== For lists of detected and suppressed errors, rerun with: -s ==28013== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)