==27541== Memcheck, a memory error detector ==27541== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27541== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27541== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info ==27541== Parent PID: 25496 ==27541== ==27541== ==27541== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27541== Open file descriptor 12: ==27541== at 0xF0A20BD: pipe (pipe.c:29) ==27541== by 0x196F507D: ??? ==27541== by 0x13C8E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27541== by 0xECEF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0xEC88D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0xD97FD38: PetscInitialize (pinit.c:924) ==27541== by 0xD4A856F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27541== by 0xD4A85BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27541== by 0x133B29: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27541== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27541== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27541== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27541== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27541== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) ==27541== ==27541== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27541== at 0xF0A6A5C: __open_nocancel (open64_nocancel.c:39) ==27541== by 0xF02AB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27541== by 0xD4DF822: ??? ==27541== by 0xD4DF96F: ??? ==27541== by 0x13D336DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27541== by 0x13D33938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27541== by 0x13CE9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27541== by 0x13C8E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27541== by 0xECEF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0xEC88D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27541== by 0xD97FD38: PetscInitialize (pinit.c:924) ==27541== by 0xD4A856F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27541== by 0xD4A85BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27541== by 0x133B29: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27541== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27541== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27541== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27541== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27541== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) ==27541== ==27541== Open file descriptor 145: ==27541== ==27541== ==27541== Open file descriptor 142: ==27541== ==27541== ==27541== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt ==27541== ==27541== ==27541== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27541== ==27541== ==27541== ==27541== HEAP SUMMARY: ==27541== in use at exit: 35,215 bytes in 290 blocks ==27541== total heap usage: 40,645 allocs, 40,355 frees, 8,424,175 bytes allocated ==27541== ==27541== LEAK SUMMARY: ==27541== definitely lost: 0 bytes in 0 blocks ==27541== indirectly lost: 0 bytes in 0 blocks ==27541== possibly lost: 0 bytes in 0 blocks ==27541== still reachable: 56 bytes in 3 blocks ==27541== suppressed: 35,159 bytes in 287 blocks ==27541== Reachable blocks (those to which a pointer was found) are not shown. ==27541== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27541== ==27541== For lists of detected and suppressed errors, rerun with: -s ==27541== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)