==42176== Memcheck, a memory error detector ==42176== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==42176== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==42176== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==42176== Parent PID: 25496 ==42176== ==42176== ==42176== FILE DESCRIPTORS: 9 open (3 std) at exit. ==42176== Open file descriptor 12: ==42176== at 0x125B30BD: pipe (pipe.c:29) ==42176== by 0x1B3B907D: ??? ==42176== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42176== by 0x11EBB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42176== by 0x11E54D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42176== by 0x6213D38: PetscInitialize (pinit.c:924) ==42176== by 0x11D7B56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42176== by 0x11D7B5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42176== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42176== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42176== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42176== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42176== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42176== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==42176== ==42176== Open file descriptor 8: /dev/shm/open_mpi.0000 ==42176== at 0x125B7A5C: __open_nocancel (open64_nocancel.c:39) ==42176== by 0x1253BB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==42176== by 0x11DB2822: ??? ==42176== by 0x11DB296F: ??? ==42176== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42176== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42176== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42176== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42176== by 0x11EBB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42176== by 0x11E54D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42176== by 0x6213D38: PetscInitialize (pinit.c:924) ==42176== by 0x11D7B56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42176== by 0x11D7B5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42176== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42176== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42176== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42176== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42176== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42176== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==42176== ==42176== Open file descriptor 145: ==42176== ==42176== ==42176== Open file descriptor 142: ==42176== ==42176== ==42176== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==42176== ==42176== ==42176== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==42176== ==42176== ==42176== ==42176== HEAP SUMMARY: ==42176== in use at exit: 35,158 bytes in 286 blocks ==42176== total heap usage: 15,986,094 allocs, 15,985,808 frees, 1,505,082,178 bytes allocated ==42176== ==42176== LEAK SUMMARY: ==42176== definitely lost: 0 bytes in 0 blocks ==42176== indirectly lost: 0 bytes in 0 blocks ==42176== possibly lost: 0 bytes in 0 blocks ==42176== still reachable: 56 bytes in 3 blocks ==42176== suppressed: 35,102 bytes in 283 blocks ==42176== Reachable blocks (those to which a pointer was found) are not shown. ==42176== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==42176== ==42176== For lists of detected and suppressed errors, rerun with: -s ==42176== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)