==41440== Memcheck, a memory error detector ==41440== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41440== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41440== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41440== Parent PID: 25496 ==41440== ==41440== ==41440== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41440== Open file descriptor 12: ==41440== at 0xF9200BD: pipe (pipe.c:29) ==41440== by 0x196F607D: ??? ==41440== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41440== by 0x1021B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41440== by 0x101B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41440== by 0x103A2D38: PetscInitialize (pinit.c:924) ==41440== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41440== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41440== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41440== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41440== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41440== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41440== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41440== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==41440== ==41440== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41440== at 0xF924A5C: __open_nocancel (open64_nocancel.c:39) ==41440== by 0xF8A8B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41440== by 0xF171822: ??? ==41440== by 0xF17196F: ??? ==41440== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41440== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41440== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41440== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41440== by 0x1021B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41440== by 0x101B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41440== by 0x103A2D38: PetscInitialize (pinit.c:924) ==41440== by 0xF13A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41440== by 0xF13A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41440== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41440== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41440== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41440== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41440== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41440== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==41440== ==41440== Open file descriptor 145: ==41440== ==41440== ==41440== Open file descriptor 142: ==41440== ==41440== ==41440== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==41440== ==41440== ==41440== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41440== ==41440== ==41440== ==41440== HEAP SUMMARY: ==41440== in use at exit: 35,215 bytes in 290 blocks ==41440== total heap usage: 647,868 allocs, 647,578 frees, 394,493,581 bytes allocated ==41440== ==41440== LEAK SUMMARY: ==41440== definitely lost: 0 bytes in 0 blocks ==41440== indirectly lost: 0 bytes in 0 blocks ==41440== possibly lost: 0 bytes in 0 blocks ==41440== still reachable: 56 bytes in 3 blocks ==41440== suppressed: 35,159 bytes in 287 blocks ==41440== Reachable blocks (those to which a pointer was found) are not shown. ==41440== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41440== ==41440== For lists of detected and suppressed errors, rerun with: -s ==41440== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)