==27174== Memcheck, a memory error detector ==27174== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27174== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27174== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==27174== Parent PID: 25029 ==27174== ==27174== ==27174== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27174== Open file descriptor 12: ==27174== at 0xF8290BD: pipe (pipe.c:29) ==27174== by 0x196E507D: ??? ==27174== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27174== by 0x10122418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27174== by 0x100BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27174== by 0x102ABD38: PetscInitialize (pinit.c:924) ==27174== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27174== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27174== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27174== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27174== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27174== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27174== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27174== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==27174== ==27174== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27174== at 0xF82DA5C: __open_nocancel (open64_nocancel.c:39) ==27174== by 0xF7B1B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27174== by 0xF161822: ??? ==27174== by 0xF16196F: ??? ==27174== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27174== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27174== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27174== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27174== by 0x10122418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27174== by 0x100BBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27174== by 0x102ABD38: PetscInitialize (pinit.c:924) ==27174== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27174== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27174== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27174== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27174== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27174== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27174== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27174== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==27174== ==27174== Open file descriptor 145: ==27174== ==27174== ==27174== Open file descriptor 142: ==27174== ==27174== ==27174== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==27174== ==27174== ==27174== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27174== ==27174== ==27174== ==27174== HEAP SUMMARY: ==27174== in use at exit: 35,215 bytes in 290 blocks ==27174== total heap usage: 1,109,563 allocs, 1,109,273 frees, 85,096,378 bytes allocated ==27174== ==27174== LEAK SUMMARY: ==27174== definitely lost: 0 bytes in 0 blocks ==27174== indirectly lost: 0 bytes in 0 blocks ==27174== possibly lost: 0 bytes in 0 blocks ==27174== still reachable: 56 bytes in 3 blocks ==27174== suppressed: 35,159 bytes in 287 blocks ==27174== Reachable blocks (those to which a pointer was found) are not shown. ==27174== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27174== ==27174== For lists of detected and suppressed errors, rerun with: -s ==27174== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)