==26776== Memcheck, a memory error detector ==26776== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26776== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26776== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26776== Parent PID: 25029 ==26776== ==26776== ==26776== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26776== Open file descriptor 12: ==26776== at 0xEFB70BD: pipe (pipe.c:29) ==26776== by 0x196E507D: ??? ==26776== by 0x13C824CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26776== by 0xEC04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26776== by 0xEB9DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26776== by 0xD894D38: PetscInitialize (pinit.c:924) ==26776== by 0xD70456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26776== by 0xD7045BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26776== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26776== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26776== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26776== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26776== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26776== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26776== ==26776== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26776== at 0xEFBBA5C: __open_nocancel (open64_nocancel.c:39) ==26776== by 0xEF3FB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26776== by 0xD73B822: ??? ==26776== by 0xD73B96F: ??? ==26776== by 0x13D276DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26776== by 0x13D27938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26776== by 0x13CDD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26776== by 0x13C822DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26776== by 0xEC04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26776== by 0xEB9DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26776== by 0xD894D38: PetscInitialize (pinit.c:924) ==26776== by 0xD70456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26776== by 0xD7045BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26776== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26776== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26776== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26776== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26776== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26776== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26776== ==26776== Open file descriptor 145: ==26776== ==26776== ==26776== Open file descriptor 142: ==26776== ==26776== ==26776== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26776== ==26776== ==26776== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26776== ==26776== ==26776== ==26776== HEAP SUMMARY: ==26776== in use at exit: 35,183 bytes in 289 blocks ==26776== total heap usage: 149,896 allocs, 149,607 frees, 18,553,857 bytes allocated ==26776== ==26776== LEAK SUMMARY: ==26776== definitely lost: 0 bytes in 0 blocks ==26776== indirectly lost: 0 bytes in 0 blocks ==26776== possibly lost: 0 bytes in 0 blocks ==26776== still reachable: 24 bytes in 2 blocks ==26776== suppressed: 35,159 bytes in 287 blocks ==26776== Reachable blocks (those to which a pointer was found) are not shown. ==26776== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26776== ==26776== For lists of detected and suppressed errors, rerun with: -s ==26776== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)