==41401== Memcheck, a memory error detector ==41401== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41401== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41401== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==41401== Parent PID: 25029 ==41401== ==41401== ==41401== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41401== Open file descriptor 12: ==41401== at 0x112180BD: pipe (pipe.c:29) ==41401== by 0x1B3AD07D: ??? ==41401== by 0x143E54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41401== by 0x11B11418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41401== by 0x11AAAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41401== by 0x11C56D38: PetscInitialize (pinit.c:924) ==41401== by 0x10A5356F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41401== by 0x10A535BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41401== by 0x23E27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41401== by 0x234879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41401== by 0x238FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41401== by 0x238E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41401== by 0x2394E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41401== by 0x232C95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==41401== ==41401== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41401== at 0x1121CA5C: __open_nocancel (open64_nocancel.c:39) ==41401== by 0x111A0B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41401== by 0x6120822: ??? ==41401== by 0x612096F: ??? ==41401== by 0x1448A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41401== by 0x1448A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41401== by 0x14440922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41401== by 0x143E52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41401== by 0x11B11418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41401== by 0x11AAAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41401== by 0x11C56D38: PetscInitialize (pinit.c:924) ==41401== by 0x10A5356F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41401== by 0x10A535BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41401== by 0x23E27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41401== by 0x234879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41401== by 0x238FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41401== by 0x238E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41401== by 0x2394E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41401== by 0x232C95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==41401== ==41401== Open file descriptor 145: ==41401== ==41401== ==41401== Open file descriptor 142: ==41401== ==41401== ==41401== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==41401== ==41401== ==41401== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41401== ==41401== ==41401== ==41401== HEAP SUMMARY: ==41401== in use at exit: 35,158 bytes in 286 blocks ==41401== total heap usage: 6,373,926 allocs, 6,373,640 frees, 743,635,833 bytes allocated ==41401== ==41401== LEAK SUMMARY: ==41401== definitely lost: 0 bytes in 0 blocks ==41401== indirectly lost: 0 bytes in 0 blocks ==41401== possibly lost: 0 bytes in 0 blocks ==41401== still reachable: 56 bytes in 3 blocks ==41401== suppressed: 35,102 bytes in 283 blocks ==41401== Reachable blocks (those to which a pointer was found) are not shown. ==41401== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41401== ==41401== For lists of detected and suppressed errors, rerun with: -s ==41401== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)