==41445== Memcheck, a memory error detector ==41445== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41445== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41445== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==41445== Parent PID: 25029 ==41445== ==41445== ==41445== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41445== Open file descriptor 12: ==41445== at 0x125E60BD: pipe (pipe.c:29) ==41445== by 0x1B3AA07D: ??? ==41445== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41445== by 0x11EEE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41445== by 0x11E87D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41445== by 0x627BD38: PetscInitialize (pinit.c:924) ==41445== by 0x11DD156F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41445== by 0x11DD15BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41445== by 0x225375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41445== by 0x21CEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41445== by 0x220AC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41445== by 0x220960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41445== by 0x220FF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41445== by 0x21B2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==41445== ==41445== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41445== at 0x125EAA5C: __open_nocancel (open64_nocancel.c:39) ==41445== by 0x1256EB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41445== by 0x6120822: ??? ==41445== by 0x612096F: ??? ==41445== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41445== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41445== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41445== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41445== by 0x11EEE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41445== by 0x11E87D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41445== by 0x627BD38: PetscInitialize (pinit.c:924) ==41445== by 0x11DD156F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41445== by 0x11DD15BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41445== by 0x225375: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41445== by 0x21CEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41445== by 0x220AC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41445== by 0x220960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41445== by 0x220FF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41445== by 0x21B2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==41445== ==41445== Open file descriptor 145: ==41445== ==41445== ==41445== Open file descriptor 142: ==41445== ==41445== ==41445== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==41445== ==41445== ==41445== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41445== ==41445== ==41445== ==41445== HEAP SUMMARY: ==41445== in use at exit: 35,158 bytes in 286 blocks ==41445== total heap usage: 3,728,477 allocs, 3,728,191 frees, 295,267,145 bytes allocated ==41445== ==41445== LEAK SUMMARY: ==41445== definitely lost: 0 bytes in 0 blocks ==41445== indirectly lost: 0 bytes in 0 blocks ==41445== possibly lost: 0 bytes in 0 blocks ==41445== still reachable: 56 bytes in 3 blocks ==41445== suppressed: 35,102 bytes in 283 blocks ==41445== Reachable blocks (those to which a pointer was found) are not shown. ==41445== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41445== ==41445== For lists of detected and suppressed errors, rerun with: -s ==41445== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)