==27448== Memcheck, a memory error detector ==27448== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27448== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27448== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==27448== Parent PID: 25029 ==27448== ==27448== ==27448== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27448== Open file descriptor 12: ==27448== at 0x10E090BD: pipe (pipe.c:29) ==27448== by 0x196E507D: ??? ==27448== by 0x14C9F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27448== by 0x1096F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27448== by 0x10908D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27448== by 0xF5FFD38: PetscInitialize (pinit.c:924) ==27448== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27448== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27448== by 0x200529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27448== by 0x1FA49F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27448== by 0x1FD7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27448== by 0x1FD6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27448== by 0x1FDCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27448== by 0x1F8C95: main (TestOffLatticeSimulation3d.cpp:18) ==27448== ==27448== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27448== at 0x10E0DA5C: __open_nocancel (open64_nocancel.c:39) ==27448== by 0x10D91B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27448== by 0xF161822: ??? ==27448== by 0xF16196F: ??? ==27448== by 0x14D446DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27448== by 0x14D44938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27448== by 0x14CFA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27448== by 0x14C9F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27448== by 0x1096F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27448== by 0x10908D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27448== by 0xF5FFD38: PetscInitialize (pinit.c:924) ==27448== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27448== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27448== by 0x200529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27448== by 0x1FA49F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27448== by 0x1FD7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27448== by 0x1FD6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27448== by 0x1FDCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27448== by 0x1F8C95: main (TestOffLatticeSimulation3d.cpp:18) ==27448== ==27448== Open file descriptor 145: ==27448== ==27448== ==27448== Open file descriptor 142: ==27448== ==27448== ==27448== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==27448== ==27448== ==27448== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27448== ==27448== ==27448== ==27448== HEAP SUMMARY: ==27448== in use at exit: 35,215 bytes in 290 blocks ==27448== total heap usage: 867,301 allocs, 867,011 frees, 175,449,743 bytes allocated ==27448== ==27448== LEAK SUMMARY: ==27448== definitely lost: 0 bytes in 0 blocks ==27448== indirectly lost: 0 bytes in 0 blocks ==27448== possibly lost: 0 bytes in 0 blocks ==27448== still reachable: 56 bytes in 3 blocks ==27448== suppressed: 35,159 bytes in 287 blocks ==27448== Reachable blocks (those to which a pointer was found) are not shown. ==27448== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27448== ==27448== For lists of detected and suppressed errors, rerun with: -s ==27448== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)