==27445== Memcheck, a memory error detector ==27445== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27445== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27445== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==27445== Parent PID: 25029 ==27445== ==27445== ==27445== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27445== Open file descriptor 12: ==27445== at 0xF9540BD: pipe (pipe.c:29) ==27445== by 0x196E507D: ??? ==27445== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27445== by 0x1024D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27445== by 0x101E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27445== by 0x10392D38: PetscInitialize (pinit.c:924) ==27445== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27445== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27445== by 0x314486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27445== by 0x30AB59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27445== by 0x30EF60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27445== by 0x30EE00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27445== by 0x30F497: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27445== by 0x308F75: main (TestOffLatticeSimulation.cpp:19) ==27445== ==27445== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27445== at 0xF958A5C: __open_nocancel (open64_nocancel.c:39) ==27445== by 0xF8DCB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27445== by 0xF161822: ??? ==27445== by 0xF16196F: ??? ==27445== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27445== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27445== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27445== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27445== by 0x1024D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27445== by 0x101E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27445== by 0x10392D38: PetscInitialize (pinit.c:924) ==27445== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27445== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27445== by 0x314486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27445== by 0x30AB59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27445== by 0x30EF60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27445== by 0x30EE00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27445== by 0x30F497: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27445== by 0x308F75: main (TestOffLatticeSimulation.cpp:19) ==27445== ==27445== Open file descriptor 145: ==27445== ==27445== ==27445== Open file descriptor 142: ==27445== ==27445== ==27445== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==27445== ==27445== ==27445== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27445== ==27445== ==27445== ==27445== HEAP SUMMARY: ==27445== in use at exit: 35,142 bytes in 286 blocks ==27445== total heap usage: 12,247,326 allocs, 12,247,040 frees, 2,503,457,930 bytes allocated ==27445== ==27445== LEAK SUMMARY: ==27445== definitely lost: 0 bytes in 0 blocks ==27445== indirectly lost: 0 bytes in 0 blocks ==27445== possibly lost: 0 bytes in 0 blocks ==27445== still reachable: 56 bytes in 3 blocks ==27445== suppressed: 35,086 bytes in 283 blocks ==27445== Reachable blocks (those to which a pointer was found) are not shown. ==27445== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27445== ==27445== For lists of detected and suppressed errors, rerun with: -s ==27445== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)