==28303== Memcheck, a memory error detector ==28303== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28303== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28303== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==28303== Parent PID: 25029 ==28303== ==28303== ==28303== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28303== Open file descriptor 12: ==28303== at 0xFDD00BD: pipe (pipe.c:29) ==28303== by 0x196E507D: ??? ==28303== by 0x12C444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28303== by 0x106C9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28303== by 0x10662D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28303== by 0x1080ED38: PetscInitialize (pinit.c:924) ==28303== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28303== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28303== by 0x1D54C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28303== by 0x1CEDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28303== by 0x1D2594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28303== by 0x1D2434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28303== by 0x1D2ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28303== by 0x1CD215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==28303== ==28303== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28303== at 0xFDD4A5C: __open_nocancel (open64_nocancel.c:39) ==28303== by 0xFD58B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28303== by 0xF161822: ??? ==28303== by 0xF16196F: ??? ==28303== by 0x12CE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28303== by 0x12CE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28303== by 0x12C9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28303== by 0x12C442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28303== by 0x106C9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28303== by 0x10662D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28303== by 0x1080ED38: PetscInitialize (pinit.c:924) ==28303== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28303== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28303== by 0x1D54C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28303== by 0x1CEDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28303== by 0x1D2594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28303== by 0x1D2434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28303== by 0x1D2ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28303== by 0x1CD215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==28303== ==28303== Open file descriptor 145: ==28303== ==28303== ==28303== Open file descriptor 142: ==28303== ==28303== ==28303== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==28303== ==28303== ==28303== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28303== ==28303== ==28303== ==28303== HEAP SUMMARY: ==28303== in use at exit: 35,142 bytes in 286 blocks ==28303== total heap usage: 7,622,705 allocs, 7,622,419 frees, 6,842,438,578 bytes allocated ==28303== ==28303== LEAK SUMMARY: ==28303== definitely lost: 0 bytes in 0 blocks ==28303== indirectly lost: 0 bytes in 0 blocks ==28303== possibly lost: 0 bytes in 0 blocks ==28303== still reachable: 56 bytes in 3 blocks ==28303== suppressed: 35,086 bytes in 283 blocks ==28303== Reachable blocks (those to which a pointer was found) are not shown. ==28303== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28303== ==28303== For lists of detected and suppressed errors, rerun with: -s ==28303== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)