==27114== Memcheck, a memory error detector ==27114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27114== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27114== Parent PID: 25029 ==27114== ==27114== ==27114== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27114== Open file descriptor 12: ==27114== at 0x10E090BD: pipe (pipe.c:29) ==27114== by 0x196E507D: ??? ==27114== by 0x14C9F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27114== by 0x1096F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27114== by 0x10908D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27114== by 0xF5FFD38: PetscInitialize (pinit.c:924) ==27114== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27114== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27114== by 0x16AA6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27114== by 0x162E89: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27114== by 0x1661D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27114== by 0x166070: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27114== by 0x166707: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27114== by 0x1612A5: main (TestPottsBasedCellPopulation.cpp:19) ==27114== ==27114== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27114== at 0x10E0DA5C: __open_nocancel (open64_nocancel.c:39) ==27114== by 0x10D91B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27114== by 0xF161822: ??? ==27114== by 0xF16196F: ??? ==27114== by 0x14D446DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27114== by 0x14D44938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27114== by 0x14CFA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27114== by 0x14C9F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27114== by 0x1096F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27114== by 0x10908D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27114== by 0xF5FFD38: PetscInitialize (pinit.c:924) ==27114== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27114== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27114== by 0x16AA6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27114== by 0x162E89: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27114== by 0x1661D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27114== by 0x166070: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27114== by 0x166707: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27114== by 0x1612A5: main (TestPottsBasedCellPopulation.cpp:19) ==27114== ==27114== Open file descriptor 145: ==27114== ==27114== ==27114== Open file descriptor 142: ==27114== ==27114== ==27114== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt ==27114== ==27114== ==27114== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27114== ==27114== ==27114== ==27114== HEAP SUMMARY: ==27114== in use at exit: 35,215 bytes in 290 blocks ==27114== total heap usage: 58,986 allocs, 58,696 frees, 12,953,471 bytes allocated ==27114== ==27114== LEAK SUMMARY: ==27114== definitely lost: 0 bytes in 0 blocks ==27114== indirectly lost: 0 bytes in 0 blocks ==27114== possibly lost: 0 bytes in 0 blocks ==27114== still reachable: 56 bytes in 3 blocks ==27114== suppressed: 35,159 bytes in 287 blocks ==27114== Reachable blocks (those to which a pointer was found) are not shown. ==27114== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27114== ==27114== For lists of detected and suppressed errors, rerun with: -s ==27114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)