==41759== Memcheck, a memory error detector ==41759== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41759== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41759== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==41759== Parent PID: 25029 ==41759== ==41759== ==41759== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41759== Open file descriptor 12: ==41759== at 0x125A40BD: pipe (pipe.c:29) ==41759== by 0x1B3AA07D: ??? ==41759== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41759== by 0x11EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41759== by 0x11E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41759== by 0x6214D38: PetscInitialize (pinit.c:924) ==41759== by 0x11D6C56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41759== by 0x11D6C5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41759== by 0x125E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41759== by 0x121713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41759== by 0x12397C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41759== by 0x123878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41759== by 0x123E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41759== by 0x11FF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41759== ==41759== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41759== at 0x125A8A5C: __open_nocancel (open64_nocancel.c:39) ==41759== by 0x1252CB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41759== by 0x11DA3822: ??? ==41759== by 0x11DA396F: ??? ==41759== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41759== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41759== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41759== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41759== by 0x11EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41759== by 0x11E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41759== by 0x6214D38: PetscInitialize (pinit.c:924) ==41759== by 0x11D6C56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41759== by 0x11D6C5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41759== by 0x125E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41759== by 0x121713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41759== by 0x12397C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41759== by 0x123878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41759== by 0x123E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41759== by 0x11FF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41759== ==41759== Open file descriptor 145: ==41759== ==41759== ==41759== Open file descriptor 142: ==41759== ==41759== ==41759== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==41759== ==41759== ==41759== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41759== ==41759== ==41759== ==41759== HEAP SUMMARY: ==41759== in use at exit: 35,158 bytes in 286 blocks ==41759== total heap usage: 16,192,403 allocs, 16,192,117 frees, 1,508,595,309 bytes allocated ==41759== ==41759== LEAK SUMMARY: ==41759== definitely lost: 0 bytes in 0 blocks ==41759== indirectly lost: 0 bytes in 0 blocks ==41759== possibly lost: 0 bytes in 0 blocks ==41759== still reachable: 56 bytes in 3 blocks ==41759== suppressed: 35,102 bytes in 283 blocks ==41759== Reachable blocks (those to which a pointer was found) are not shown. ==41759== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41759== ==41759== For lists of detected and suppressed errors, rerun with: -s ==41759== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)