==41127== Memcheck, a memory error detector ==41127== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41127== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41127== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41127== Parent PID: 25029 ==41127== ==41127== ==41127== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41127== Open file descriptor 12: ==41127== at 0x10DC70BD: pipe (pipe.c:29) ==41127== by 0x196E507D: ??? ==41127== by 0x14C9F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41127== by 0x1092D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41127== by 0x108C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41127== by 0xF5BDD38: PetscInitialize (pinit.c:924) ==41127== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41127== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41127== by 0x12A8A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41127== by 0x125A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41127== by 0x1280AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41127== by 0x127F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41127== by 0x1285E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41127== by 0x123E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==41127== ==41127== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41127== at 0x10DCBA5C: __open_nocancel (open64_nocancel.c:39) ==41127== by 0x10D4FB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41127== by 0xF161822: ??? ==41127== by 0xF16196F: ??? ==41127== by 0x14D446DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41127== by 0x14D44938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41127== by 0x14CFA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41127== by 0x14C9F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41127== by 0x1092D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41127== by 0x108C6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41127== by 0xF5BDD38: PetscInitialize (pinit.c:924) ==41127== by 0xF12A56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41127== by 0xF12A5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41127== by 0x12A8A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41127== by 0x125A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41127== by 0x1280AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41127== by 0x127F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41127== by 0x1285E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41127== by 0x123E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==41127== ==41127== Open file descriptor 145: ==41127== ==41127== ==41127== Open file descriptor 142: ==41127== ==41127== ==41127== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==41127== ==41127== ==41127== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41127== ==41127== ==41127== ==41127== HEAP SUMMARY: ==41127== in use at exit: 35,142 bytes in 286 blocks ==41127== total heap usage: 1,384,874 allocs, 1,384,588 frees, 67,778,421 bytes allocated ==41127== ==41127== LEAK SUMMARY: ==41127== definitely lost: 0 bytes in 0 blocks ==41127== indirectly lost: 0 bytes in 0 blocks ==41127== possibly lost: 0 bytes in 0 blocks ==41127== still reachable: 56 bytes in 3 blocks ==41127== suppressed: 35,086 bytes in 283 blocks ==41127== Reachable blocks (those to which a pointer was found) are not shown. ==41127== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41127== ==41127== For lists of detected and suppressed errors, rerun with: -s ==41127== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)