==26811== Memcheck, a memory error detector ==26811== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26811== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26811== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26811== Parent PID: 25029 ==26811== ==26811== ==26811== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26811== Open file descriptor 12: ==26811== at 0xDB730BD: pipe (pipe.c:29) ==26811== by 0x196E607D: ??? ==26811== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26811== by 0xFE1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26811== by 0xFDB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26811== by 0xFF66D38: PetscInitialize (pinit.c:924) ==26811== by 0xD77756F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26811== by 0xD7775BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26811== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26811== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26811== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26811== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26811== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26811== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26811== ==26811== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26811== at 0xDB77A5C: __open_nocancel (open64_nocancel.c:39) ==26811== by 0xDAFBB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26811== by 0xD7AE822: ??? ==26811== by 0xD7AE96F: ??? ==26811== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26811== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26811== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26811== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26811== by 0xFE1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26811== by 0xFDB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26811== by 0xFF66D38: PetscInitialize (pinit.c:924) ==26811== by 0xD77756F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26811== by 0xD7775BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26811== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26811== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26811== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26811== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26811== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26811== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26811== ==26811== Open file descriptor 145: ==26811== ==26811== ==26811== Open file descriptor 142: ==26811== ==26811== ==26811== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26811== ==26811== ==26811== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26811== ==26811== ==26811== ==26811== HEAP SUMMARY: ==26811== in use at exit: 35,183 bytes in 289 blocks ==26811== total heap usage: 42,210 allocs, 41,921 frees, 8,233,022 bytes allocated ==26811== ==26811== LEAK SUMMARY: ==26811== definitely lost: 0 bytes in 0 blocks ==26811== indirectly lost: 0 bytes in 0 blocks ==26811== possibly lost: 0 bytes in 0 blocks ==26811== still reachable: 24 bytes in 2 blocks ==26811== suppressed: 35,159 bytes in 287 blocks ==26811== Reachable blocks (those to which a pointer was found) are not shown. ==26811== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26811== ==26811== For lists of detected and suppressed errors, rerun with: -s ==26811== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)