==41155== Memcheck, a memory error detector ==41155== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41155== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41155== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==41155== Parent PID: 24413 ==41155== ==41155== ==41155== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41155== Open file descriptor 12: ==41155== at 0x125960BD: pipe (pipe.c:29) ==41155== by 0x1B39C07D: ??? ==41155== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41155== by 0x11E9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41155== by 0x11E37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41155== by 0x6210D38: PetscInitialize (pinit.c:924) ==41155== by 0x11D5E56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41155== by 0x11D5E5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41155== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41155== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41155== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41155== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41155== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41155== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41155== ==41155== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41155== at 0x1259AA5C: __open_nocancel (open64_nocancel.c:39) ==41155== by 0x1251EB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41155== by 0x11D95822: ??? ==41155== by 0x11D9596F: ??? ==41155== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41155== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41155== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41155== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41155== by 0x11E9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41155== by 0x11E37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41155== by 0x6210D38: PetscInitialize (pinit.c:924) ==41155== by 0x11D5E56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41155== by 0x11D5E5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41155== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41155== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41155== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41155== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41155== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41155== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41155== ==41155== Open file descriptor 145: ==41155== ==41155== ==41155== Open file descriptor 142: ==41155== ==41155== ==41155== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==41155== ==41155== ==41155== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41155== ==41155== ==41155== ==41155== HEAP SUMMARY: ==41155== in use at exit: 35,158 bytes in 286 blocks ==41155== total heap usage: 16,192,401 allocs, 16,192,115 frees, 1,508,595,287 bytes allocated ==41155== ==41155== LEAK SUMMARY: ==41155== definitely lost: 0 bytes in 0 blocks ==41155== indirectly lost: 0 bytes in 0 blocks ==41155== possibly lost: 0 bytes in 0 blocks ==41155== still reachable: 56 bytes in 3 blocks ==41155== suppressed: 35,102 bytes in 283 blocks ==41155== Reachable blocks (those to which a pointer was found) are not shown. ==41155== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41155== ==41155== For lists of detected and suppressed errors, rerun with: -s ==41155== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)