==26879== Memcheck, a memory error detector ==26879== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26879== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26879== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26879== Parent PID: 24421 ==26879== ==26879== ==26879== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26879== Open file descriptor 12: ==26879== at 0x10E010BD: pipe (pipe.c:29) ==26879== by 0x196DD07D: ??? ==26879== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26879== by 0x10967418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26879== by 0x10900D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26879== by 0xF5F7D38: PetscInitialize (pinit.c:924) ==26879== by 0xF12256F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26879== by 0xF1225BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26879== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26879== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26879== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26879== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26879== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26879== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==26879== ==26879== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26879== at 0x10E05A5C: __open_nocancel (open64_nocancel.c:39) ==26879== by 0x10D89B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26879== by 0xF159822: ??? ==26879== by 0xF15996F: ??? ==26879== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26879== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26879== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26879== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26879== by 0x10967418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26879== by 0x10900D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26879== by 0xF5F7D38: PetscInitialize (pinit.c:924) ==26879== by 0xF12256F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26879== by 0xF1225BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26879== by 0x1FF529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26879== by 0x1F949F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26879== by 0x1FC7B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26879== by 0x1FC6B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26879== by 0x1FCCC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26879== by 0x1F7C95: main (TestOffLatticeSimulation3d.cpp:18) ==26879== ==26879== Open file descriptor 145: ==26879== ==26879== ==26879== Open file descriptor 142: ==26879== ==26879== ==26879== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26879== ==26879== ==26879== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26879== ==26879== ==26879== ==26879== HEAP SUMMARY: ==26879== in use at exit: 35,215 bytes in 290 blocks ==26879== total heap usage: 867,300 allocs, 867,010 frees, 175,449,557 bytes allocated ==26879== ==26879== LEAK SUMMARY: ==26879== definitely lost: 0 bytes in 0 blocks ==26879== indirectly lost: 0 bytes in 0 blocks ==26879== possibly lost: 0 bytes in 0 blocks ==26879== still reachable: 56 bytes in 3 blocks ==26879== suppressed: 35,159 bytes in 287 blocks ==26879== Reachable blocks (those to which a pointer was found) are not shown. ==26879== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26879== ==26879== For lists of detected and suppressed errors, rerun with: -s ==26879== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)