==27699== Memcheck, a memory error detector ==27699== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27699== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27699== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27699== Parent PID: 24421 ==27699== ==27699== ==27699== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27699== Open file descriptor 12: ==27699== at 0xFCA70BD: pipe (pipe.c:29) ==27699== by 0x196DE07D: ??? ==27699== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27699== by 0x10203418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27699== by 0x1019CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27699== by 0x1038AD38: PetscInitialize (pinit.c:924) ==27699== by 0xF4BF56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27699== by 0xF4BF5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27699== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27699== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27699== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27699== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27699== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27699== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==27699== ==27699== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27699== at 0xFCABA5C: __open_nocancel (open64_nocancel.c:39) ==27699== by 0xFC2FB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27699== by 0xF4F6822: ??? ==27699== by 0xF4F696F: ??? ==27699== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27699== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27699== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27699== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27699== by 0x10203418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27699== by 0x1019CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27699== by 0x1038AD38: PetscInitialize (pinit.c:924) ==27699== by 0xF4BF56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27699== by 0xF4BF5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27699== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27699== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27699== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27699== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27699== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27699== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==27699== ==27699== Open file descriptor 145: ==27699== ==27699== ==27699== Open file descriptor 142: ==27699== ==27699== ==27699== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==27699== ==27699== ==27699== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27699== ==27699== ==27699== ==27699== HEAP SUMMARY: ==27699== in use at exit: 35,142 bytes in 286 blocks ==27699== total heap usage: 2,392,672 allocs, 2,392,386 frees, 464,522,236 bytes allocated ==27699== ==27699== LEAK SUMMARY: ==27699== definitely lost: 0 bytes in 0 blocks ==27699== indirectly lost: 0 bytes in 0 blocks ==27699== possibly lost: 0 bytes in 0 blocks ==27699== still reachable: 56 bytes in 3 blocks ==27699== suppressed: 35,086 bytes in 283 blocks ==27699== Reachable blocks (those to which a pointer was found) are not shown. ==27699== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27699== ==27699== For lists of detected and suppressed errors, rerun with: -s ==27699== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)