==41149== Memcheck, a memory error detector ==41149== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41149== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41149== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==41149== Parent PID: 24421 ==41149== ==41149== ==41149== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41149== Open file descriptor 12: ==41149== at 0x125980BD: pipe (pipe.c:29) ==41149== by 0x1B3A007D: ??? ==41149== by 0x164FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41149== by 0x11EA0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41149== by 0x11E39D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41149== by 0x6210D38: PetscInitialize (pinit.c:924) ==41149== by 0x11D6056F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41149== by 0x11D605BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41149== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41149== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41149== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41149== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41149== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41149== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41149== ==41149== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41149== at 0x1259CA5C: __open_nocancel (open64_nocancel.c:39) ==41149== by 0x12520B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41149== by 0x11D97822: ??? ==41149== by 0x11D9796F: ??? ==41149== by 0x165A26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41149== by 0x165A2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41149== by 0x16558922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41149== by 0x164FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41149== by 0x11EA0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41149== by 0x11E39D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41149== by 0x6210D38: PetscInitialize (pinit.c:924) ==41149== by 0x11D6056F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41149== by 0x11D605BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41149== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41149== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41149== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41149== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41149== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41149== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41149== ==41149== Open file descriptor 145: ==41149== ==41149== ==41149== Open file descriptor 142: ==41149== ==41149== ==41149== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==41149== ==41149== ==41149== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41149== ==41149== ==41149== ==41149== HEAP SUMMARY: ==41149== in use at exit: 35,158 bytes in 286 blocks ==41149== total heap usage: 16,192,398 allocs, 16,192,112 frees, 1,508,595,209 bytes allocated ==41149== ==41149== LEAK SUMMARY: ==41149== definitely lost: 0 bytes in 0 blocks ==41149== indirectly lost: 0 bytes in 0 blocks ==41149== possibly lost: 0 bytes in 0 blocks ==41149== still reachable: 56 bytes in 3 blocks ==41149== suppressed: 35,102 bytes in 283 blocks ==41149== Reachable blocks (those to which a pointer was found) are not shown. ==41149== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41149== ==41149== For lists of detected and suppressed errors, rerun with: -s ==41149== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)