==29297== Memcheck, a memory error detector ==29297== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==29297== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==29297== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==29297== Parent PID: 24419 ==29297== ==29297== ==29297== FILE DESCRIPTORS: 9 open (3 std) at exit. ==29297== Open file descriptor 12: ==29297== at 0xFCAB0BD: pipe (pipe.c:29) ==29297== by 0x196E107D: ??? ==29297== by 0x12B294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29297== by 0x10207418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29297== by 0x101A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29297== by 0x1038ED38: PetscInitialize (pinit.c:924) ==29297== by 0xF4C356F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29297== by 0xF4C35BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29297== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29297== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29297== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29297== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29297== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29297== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29297== ==29297== Open file descriptor 8: /dev/shm/open_mpi.0000 ==29297== at 0xFCAFA5C: __open_nocancel (open64_nocancel.c:39) ==29297== by 0xFC33B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==29297== by 0xF4FA822: ??? ==29297== by 0xF4FA96F: ??? ==29297== by 0x12BCE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29297== by 0x12BCE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29297== by 0x12B84922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29297== by 0x12B292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29297== by 0x10207418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29297== by 0x101A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29297== by 0x1038ED38: PetscInitialize (pinit.c:924) ==29297== by 0xF4C356F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29297== by 0xF4C35BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29297== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29297== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29297== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29297== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29297== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29297== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29297== ==29297== Open file descriptor 145: ==29297== ==29297== ==29297== Open file descriptor 142: ==29297== ==29297== ==29297== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==29297== ==29297== ==29297== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==29297== ==29297== ==29297== ==29297== HEAP SUMMARY: ==29297== in use at exit: 35,142 bytes in 286 blocks ==29297== total heap usage: 1,271,111 allocs, 1,270,825 frees, 192,612,487 bytes allocated ==29297== ==29297== LEAK SUMMARY: ==29297== definitely lost: 0 bytes in 0 blocks ==29297== indirectly lost: 0 bytes in 0 blocks ==29297== possibly lost: 0 bytes in 0 blocks ==29297== still reachable: 56 bytes in 3 blocks ==29297== suppressed: 35,086 bytes in 283 blocks ==29297== Reachable blocks (those to which a pointer was found) are not shown. ==29297== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==29297== ==29297== For lists of detected and suppressed errors, rerun with: -s ==29297== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)