==37103== Memcheck, a memory error detector ==37103== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==37103== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==37103== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==37103== Parent PID: 24419 ==37103== ==37103== ==37103== FILE DESCRIPTORS: 9 open (3 std) at exit. ==37103== Open file descriptor 12: ==37103== at 0xF9510BD: pipe (pipe.c:29) ==37103== by 0x196E307D: ??? ==37103== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==37103== by 0x10249418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37103== by 0x101E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37103== by 0x1038ED38: PetscInitialize (pinit.c:924) ==37103== by 0xF12756F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==37103== by 0xF1275BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==37103== by 0x1D7568: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==37103== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==37103== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==37103== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==37103== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==37103== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==37103== ==37103== Open file descriptor 8: /dev/shm/open_mpi.0000 ==37103== at 0xF955A5C: __open_nocancel (open64_nocancel.c:39) ==37103== by 0xF8D9B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==37103== by 0xF15E822: ??? ==37103== by 0xF15E96F: ??? ==37103== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37103== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37103== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==37103== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==37103== by 0x10249418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37103== by 0x101E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==37103== by 0x1038ED38: PetscInitialize (pinit.c:924) ==37103== by 0xF12756F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==37103== by 0xF1275BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==37103== by 0x1D7568: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==37103== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==37103== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==37103== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==37103== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==37103== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==37103== ==37103== Open file descriptor 145: ==37103== ==37103== ==37103== Open file descriptor 142: ==37103== ==37103== ==37103== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==37103== ==37103== ==37103== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==37103== ==37103== ==37103== ==37103== HEAP SUMMARY: ==37103== in use at exit: 35,158 bytes in 287 blocks ==37103== total heap usage: 9,522,654 allocs, 9,522,367 frees, 464,265,023 bytes allocated ==37103== ==37103== LEAK SUMMARY: ==37103== definitely lost: 0 bytes in 0 blocks ==37103== indirectly lost: 0 bytes in 0 blocks ==37103== possibly lost: 0 bytes in 0 blocks ==37103== still reachable: 72 bytes in 4 blocks ==37103== suppressed: 35,086 bytes in 283 blocks ==37103== Reachable blocks (those to which a pointer was found) are not shown. ==37103== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==37103== ==37103== For lists of detected and suppressed errors, rerun with: -s ==37103== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)