==41158== Memcheck, a memory error detector ==41158== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41158== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41158== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41158== Parent PID: 24419 ==41158== ==41158== ==41158== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41158== Open file descriptor 12: ==41158== at 0x1259D0BD: pipe (pipe.c:29) ==41158== by 0x1B3A307D: ??? ==41158== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41158== by 0x11EA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41158== by 0x11E3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41158== by 0x6210D38: PetscInitialize (pinit.c:924) ==41158== by 0x11D6556F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41158== by 0x11D655BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41158== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41158== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41158== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41158== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41158== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41158== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==41158== ==41158== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41158== at 0x125A1A5C: __open_nocancel (open64_nocancel.c:39) ==41158== by 0x12525B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41158== by 0x11D9C822: ??? ==41158== by 0x11D9C96F: ??? ==41158== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41158== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41158== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41158== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41158== by 0x11EA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41158== by 0x11E3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41158== by 0x6210D38: PetscInitialize (pinit.c:924) ==41158== by 0x11D6556F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41158== by 0x11D655BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41158== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41158== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41158== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41158== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41158== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41158== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==41158== ==41158== Open file descriptor 145: ==41158== ==41158== ==41158== Open file descriptor 142: ==41158== ==41158== ==41158== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==41158== ==41158== ==41158== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41158== ==41158== ==41158== ==41158== HEAP SUMMARY: ==41158== in use at exit: 35,231 bytes in 290 blocks ==41158== total heap usage: 1,747,649 allocs, 1,747,359 frees, 186,061,067 bytes allocated ==41158== ==41158== LEAK SUMMARY: ==41158== definitely lost: 0 bytes in 0 blocks ==41158== indirectly lost: 0 bytes in 0 blocks ==41158== possibly lost: 0 bytes in 0 blocks ==41158== still reachable: 56 bytes in 3 blocks ==41158== suppressed: 35,175 bytes in 287 blocks ==41158== Reachable blocks (those to which a pointer was found) are not shown. ==41158== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41158== ==41158== For lists of detected and suppressed errors, rerun with: -s ==41158== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)