==40581== Memcheck, a memory error detector ==40581== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40581== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40581== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40581== Parent PID: 24419 ==40581== ==40581== ==40581== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40581== Open file descriptor 12: ==40581== at 0x1096E0BD: pipe (pipe.c:29) ==40581== by 0x1B3A207D: ??? ==40581== by 0x154ED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40581== by 0x10276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40581== by 0x1020FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40581== by 0x6277D38: PetscInitialize (pinit.c:924) ==40581== by 0x1015956F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40581== by 0x101595BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40581== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40581== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40581== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40581== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40581== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40581== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40581== ==40581== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40581== at 0x10972A5C: __open_nocancel (open64_nocancel.c:39) ==40581== by 0x108F6B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40581== by 0x611C822: ??? ==40581== by 0x611C96F: ??? ==40581== by 0x155926DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40581== by 0x15592938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40581== by 0x15548922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40581== by 0x154ED2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40581== by 0x10276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40581== by 0x1020FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40581== by 0x6277D38: PetscInitialize (pinit.c:924) ==40581== by 0x1015956F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40581== by 0x101595BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40581== by 0x18F0ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40581== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40581== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40581== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40581== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40581== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40581== ==40581== Open file descriptor 145: ==40581== ==40581== ==40581== Open file descriptor 142: ==40581== ==40581== ==40581== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40581== ==40581== ==40581== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40581== ==40581== ==40581== ==40581== HEAP SUMMARY: ==40581== in use at exit: 35,295 bytes in 291 blocks ==40581== total heap usage: 738,534 allocs, 738,243 frees, 41,696,474 bytes allocated ==40581== ==40581== LEAK SUMMARY: ==40581== definitely lost: 0 bytes in 0 blocks ==40581== indirectly lost: 0 bytes in 0 blocks ==40581== possibly lost: 0 bytes in 0 blocks ==40581== still reachable: 120 bytes in 4 blocks ==40581== suppressed: 35,175 bytes in 287 blocks ==40581== Reachable blocks (those to which a pointer was found) are not shown. ==40581== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40581== ==40581== For lists of detected and suppressed errors, rerun with: -s ==40581== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)