==40586== Memcheck, a memory error detector ==40586== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40586== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40586== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40586== Parent PID: 24230 ==40586== ==40586== ==40586== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40586== Open file descriptor 12: ==40586== at 0x1123E0BD: pipe (pipe.c:29) ==40586== by 0x1B3D307D: ??? ==40586== by 0x144324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40586== by 0x11B38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40586== by 0x11AD1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40586== by 0x11C7DD38: PetscInitialize (pinit.c:924) ==40586== by 0x10A78A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40586== by 0x10A78A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40586== by 0x23B57C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40586== by 0x2319BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40586== by 0x236AF2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40586== by 0x23698A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40586== by 0x237055: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40586== by 0x22FCA2: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40586== ==40586== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40586== at 0x11242A5C: __open_nocancel (open64_nocancel.c:39) ==40586== by 0x111C6B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40586== by 0x611C822: ??? ==40586== by 0x611C96F: ??? ==40586== by 0x144D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40586== by 0x144D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40586== by 0x1448D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40586== by 0x144322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40586== by 0x11B38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40586== by 0x11AD1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40586== by 0x11C7DD38: PetscInitialize (pinit.c:924) ==40586== by 0x10A78A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40586== by 0x10A78A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40586== by 0x23B57C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40586== by 0x2319BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40586== by 0x236AF2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40586== by 0x23698A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40586== by 0x237055: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40586== by 0x22FCA2: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40586== ==40586== Open file descriptor 145: ==40586== ==40586== ==40586== Open file descriptor 142: ==40586== ==40586== ==40586== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40586== ==40586== ==40586== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40586== ==40586== ==40586== ==40586== HEAP SUMMARY: ==40586== in use at exit: 16,993 bytes in 69 blocks ==40586== total heap usage: 6,373,443 allocs, 6,373,374 frees, 742,555,253 bytes allocated ==40586== ==40586== LEAK SUMMARY: ==40586== definitely lost: 0 bytes in 0 blocks ==40586== indirectly lost: 0 bytes in 0 blocks ==40586== possibly lost: 0 bytes in 0 blocks ==40586== still reachable: 56 bytes in 3 blocks ==40586== suppressed: 16,937 bytes in 66 blocks ==40586== Reachable blocks (those to which a pointer was found) are not shown. ==40586== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40586== ==40586== For lists of detected and suppressed errors, rerun with: -s ==40586== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)