==40631== Memcheck, a memory error detector ==40631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40631== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40631== Parent PID: 24230 ==40631== ==40631== ==40631== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40631== Open file descriptor 12: ==40631== at 0x1260C0BD: pipe (pipe.c:29) ==40631== by 0x1B3D107D: ??? ==40631== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40631== by 0x11F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40631== by 0x11EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40631== by 0x6277D38: PetscInitialize (pinit.c:924) ==40631== by 0x11DF6A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40631== by 0x11DF6A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40631== by 0x224659: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40631== by 0x21BFFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40631== by 0x220608: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40631== by 0x2204A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40631== by 0x220B6B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40631== by 0x21A2E2: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40631== ==40631== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40631== at 0x12610A5C: __open_nocancel (open64_nocancel.c:39) ==40631== by 0x12594B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40631== by 0x611C822: ??? ==40631== by 0x611C96F: ??? ==40631== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40631== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40631== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40631== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40631== by 0x11F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40631== by 0x11EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40631== by 0x6277D38: PetscInitialize (pinit.c:924) ==40631== by 0x11DF6A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40631== by 0x11DF6A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40631== by 0x224659: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40631== by 0x21BFFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40631== by 0x220608: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40631== by 0x2204A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40631== by 0x220B6B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40631== by 0x21A2E2: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40631== ==40631== Open file descriptor 145: ==40631== ==40631== ==40631== Open file descriptor 142: ==40631== ==40631== ==40631== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40631== ==40631== ==40631== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40631== ==40631== ==40631== ==40631== HEAP SUMMARY: ==40631== in use at exit: 16,993 bytes in 69 blocks ==40631== total heap usage: 3,727,991 allocs, 3,727,922 frees, 294,186,314 bytes allocated ==40631== ==40631== LEAK SUMMARY: ==40631== definitely lost: 0 bytes in 0 blocks ==40631== indirectly lost: 0 bytes in 0 blocks ==40631== possibly lost: 0 bytes in 0 blocks ==40631== still reachable: 56 bytes in 3 blocks ==40631== suppressed: 16,937 bytes in 66 blocks ==40631== Reachable blocks (those to which a pointer was found) are not shown. ==40631== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40631== ==40631== For lists of detected and suppressed errors, rerun with: -s ==40631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)