==26638== Memcheck, a memory error detector ==26638== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26638== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26638== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26638== Parent PID: 24230 ==26638== ==26638== ==26638== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26638== Open file descriptor 12: ==26638== at 0x10E330BD: pipe (pipe.c:29) ==26638== by 0x1971007D: ??? ==26638== by 0x14CBD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26638== by 0x10999418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26638== by 0x10932D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26638== by 0xF629D38: PetscInitialize (pinit.c:924) ==26638== by 0xF153A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26638== by 0xF153A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26638== by 0x1FF7F1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26638== by 0x1F95E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26638== by 0x1FD2D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26638== by 0x1FD1C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26638== by 0x1FD80F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26638== by 0x1F7CA2: main (TestOffLatticeSimulation3d.cpp:18) ==26638== ==26638== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26638== at 0x10E37A5C: __open_nocancel (open64_nocancel.c:39) ==26638== by 0x10DBBB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26638== by 0xF18B822: ??? ==26638== by 0xF18B96F: ??? ==26638== by 0x14D626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26638== by 0x14D62938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26638== by 0x14D18922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26638== by 0x14CBD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26638== by 0x10999418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26638== by 0x10932D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26638== by 0xF629D38: PetscInitialize (pinit.c:924) ==26638== by 0xF153A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26638== by 0xF153A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26638== by 0x1FF7F1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26638== by 0x1F95E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26638== by 0x1FD2D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26638== by 0x1FD1C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26638== by 0x1FD80F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26638== by 0x1F7CA2: main (TestOffLatticeSimulation3d.cpp:18) ==26638== ==26638== Open file descriptor 145: ==26638== ==26638== ==26638== Open file descriptor 142: ==26638== ==26638== ==26638== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26638== ==26638== ==26638== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26638== ==26638== ==26638== ==26638== HEAP SUMMARY: ==26638== in use at exit: 17,050 bytes in 73 blocks ==26638== total heap usage: 866,814 allocs, 866,741 frees, 174,368,602 bytes allocated ==26638== ==26638== LEAK SUMMARY: ==26638== definitely lost: 0 bytes in 0 blocks ==26638== indirectly lost: 0 bytes in 0 blocks ==26638== possibly lost: 0 bytes in 0 blocks ==26638== still reachable: 56 bytes in 3 blocks ==26638== suppressed: 16,994 bytes in 70 blocks ==26638== Reachable blocks (those to which a pointer was found) are not shown. ==26638== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26638== ==26638== For lists of detected and suppressed errors, rerun with: -s ==26638== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)