==27082== Memcheck, a memory error detector ==27082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27082== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27082== Parent PID: 24230 ==27082== ==27082== ==27082== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27082== Open file descriptor 12: ==27082== at 0xFD1B0BD: pipe (pipe.c:29) ==27082== by 0x1971007D: ??? ==27082== by 0x12B5B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27082== by 0x10278418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27082== by 0x10211D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27082== by 0x103BDD38: PetscInitialize (pinit.c:924) ==27082== by 0xF4F0A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27082== by 0xF4F0A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27082== by 0x22270E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27082== by 0x21BC75: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27082== by 0x220188: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27082== by 0x220020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27082== by 0x2206EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27082== by 0x219F22: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27082== ==27082== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27082== at 0xFD1FA5C: __open_nocancel (open64_nocancel.c:39) ==27082== by 0xFCA3B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27082== by 0xF528822: ??? ==27082== by 0xF52896F: ??? ==27082== by 0x12C006DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27082== by 0x12C00938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27082== by 0x12BB6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27082== by 0x12B5B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27082== by 0x10278418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27082== by 0x10211D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27082== by 0x103BDD38: PetscInitialize (pinit.c:924) ==27082== by 0xF4F0A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27082== by 0xF4F0A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27082== by 0x22270E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27082== by 0x21BC75: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27082== by 0x220188: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27082== by 0x220020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27082== by 0x2206EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27082== by 0x219F22: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27082== ==27082== Open file descriptor 145: ==27082== ==27082== ==27082== Open file descriptor 142: ==27082== ==27082== ==27082== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27082== ==27082== ==27082== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27082== ==27082== ==27082== ==27082== HEAP SUMMARY: ==27082== in use at exit: 16,977 bytes in 69 blocks ==27082== total heap usage: 8,127,788 allocs, 8,127,719 frees, 1,368,180,819 bytes allocated ==27082== ==27082== LEAK SUMMARY: ==27082== definitely lost: 0 bytes in 0 blocks ==27082== indirectly lost: 0 bytes in 0 blocks ==27082== possibly lost: 0 bytes in 0 blocks ==27082== still reachable: 56 bytes in 3 blocks ==27082== suppressed: 16,921 bytes in 66 blocks ==27082== Reachable blocks (those to which a pointer was found) are not shown. ==27082== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27082== ==27082== For lists of detected and suppressed errors, rerun with: -s ==27082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)