==27323== Memcheck, a memory error detector ==27323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27323== Parent PID: 24230 ==27323== ==27323== ==27323== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27323== Open file descriptor 12: ==27323== at 0x10E330BD: pipe (pipe.c:29) ==27323== by 0x1971007D: ??? ==27323== by 0x14CBD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27323== by 0x10999418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0x10932D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0xF629D38: PetscInitialize (pinit.c:924) ==27323== by 0xF153A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27323== by 0xF153A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27323== by 0x2001F1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27323== by 0x1F9C3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27323== by 0x1FDF82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27323== by 0x1FDE1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27323== by 0x1FE4E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27323== by 0x1F7F22: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27323== ==27323== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27323== at 0x10E37A5C: __open_nocancel (open64_nocancel.c:39) ==27323== by 0x10DBBB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27323== by 0xF18B822: ??? ==27323== by 0xF18B96F: ??? ==27323== by 0x14D626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27323== by 0x14D62938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27323== by 0x14D18922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27323== by 0x14CBD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27323== by 0x10999418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0x10932D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27323== by 0xF629D38: PetscInitialize (pinit.c:924) ==27323== by 0xF153A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27323== by 0xF153A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27323== by 0x2001F1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27323== by 0x1F9C3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27323== by 0x1FDF82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27323== by 0x1FDE1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27323== by 0x1FE4E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27323== by 0x1F7F22: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27323== ==27323== Open file descriptor 145: ==27323== ==27323== ==27323== Open file descriptor 142: ==27323== ==27323== ==27323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27323== ==27323== ==27323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27323== ==27323== ==27323== ==27323== HEAP SUMMARY: ==27323== in use at exit: 16,977 bytes in 69 blocks ==27323== total heap usage: 10,142,908 allocs, 10,142,839 frees, 1,341,125,964 bytes allocated ==27323== ==27323== LEAK SUMMARY: ==27323== definitely lost: 0 bytes in 0 blocks ==27323== indirectly lost: 0 bytes in 0 blocks ==27323== possibly lost: 0 bytes in 0 blocks ==27323== still reachable: 56 bytes in 3 blocks ==27323== suppressed: 16,921 bytes in 66 blocks ==27323== Reachable blocks (those to which a pointer was found) are not shown. ==27323== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27323== ==27323== For lists of detected and suppressed errors, rerun with: -s ==27323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)