==40961== Memcheck, a memory error detector ==40961== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40961== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40961== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==40961== Parent PID: 24230 ==40961== ==40961== ==40961== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40961== Open file descriptor 12: ==40961== at 0x125CA0BD: pipe (pipe.c:29) ==40961== by 0x1B3D107D: ??? ==40961== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40961== by 0x11ED2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40961== by 0x11E6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40961== by 0x6210D38: PetscInitialize (pinit.c:924) ==40961== by 0x11D91A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40961== by 0x11D91A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40961== by 0x124057: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40961== by 0x11F857: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40961== by 0x121EA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40961== by 0x121D94: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40961== by 0x1223DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40961== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40961== ==40961== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40961== at 0x125CEA5C: __open_nocancel (open64_nocancel.c:39) ==40961== by 0x12552B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40961== by 0x11DC9822: ??? ==40961== by 0x11DC996F: ??? ==40961== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40961== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40961== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40961== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40961== by 0x11ED2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40961== by 0x11E6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40961== by 0x6210D38: PetscInitialize (pinit.c:924) ==40961== by 0x11D91A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40961== by 0x11D91A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40961== by 0x124057: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40961== by 0x11F857: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40961== by 0x121EA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40961== by 0x121D94: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40961== by 0x1223DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40961== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40961== ==40961== Open file descriptor 145: ==40961== ==40961== ==40961== Open file descriptor 142: ==40961== ==40961== ==40961== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==40961== ==40961== ==40961== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40961== ==40961== ==40961== ==40961== HEAP SUMMARY: ==40961== in use at exit: 16,993 bytes in 69 blocks ==40961== total heap usage: 16,191,917 allocs, 16,191,848 frees, 1,507,514,270 bytes allocated ==40961== ==40961== LEAK SUMMARY: ==40961== definitely lost: 0 bytes in 0 blocks ==40961== indirectly lost: 0 bytes in 0 blocks ==40961== possibly lost: 0 bytes in 0 blocks ==40961== still reachable: 56 bytes in 3 blocks ==40961== suppressed: 16,937 bytes in 66 blocks ==40961== Reachable blocks (those to which a pointer was found) are not shown. ==40961== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40961== ==40961== For lists of detected and suppressed errors, rerun with: -s ==40961== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)