==40242== Memcheck, a memory error detector ==40242== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40242== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40242== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40242== Parent PID: 24230 ==40242== ==40242== ==40242== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40242== Open file descriptor 12: ==40242== at 0xFBF00BD: pipe (pipe.c:29) ==40242== by 0x1971007D: ??? ==40242== by 0x12B5B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40242== by 0x1014D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40242== by 0x100E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40242== by 0x102D6D38: PetscInitialize (pinit.c:924) ==40242== by 0xF4F0A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40242== by 0xF4F0A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40242== by 0x11CC0C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40242== by 0x118457: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40242== by 0x11AB22: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40242== by 0x11AA15: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40242== by 0x11B05D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40242== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40242== ==40242== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40242== at 0xFBF4A5C: __open_nocancel (open64_nocancel.c:39) ==40242== by 0xFB78B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40242== by 0xF528822: ??? ==40242== by 0xF52896F: ??? ==40242== by 0x12C006DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40242== by 0x12C00938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40242== by 0x12BB6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40242== by 0x12B5B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40242== by 0x1014D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40242== by 0x100E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40242== by 0x102D6D38: PetscInitialize (pinit.c:924) ==40242== by 0xF4F0A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40242== by 0xF4F0A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40242== by 0x11CC0C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40242== by 0x118457: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40242== by 0x11AB22: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40242== by 0x11AA15: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40242== by 0x11B05D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40242== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40242== ==40242== Open file descriptor 145: ==40242== ==40242== ==40242== Open file descriptor 142: ==40242== ==40242== ==40242== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40242== ==40242== ==40242== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40242== ==40242== ==40242== ==40242== HEAP SUMMARY: ==40242== in use at exit: 16,977 bytes in 69 blocks ==40242== total heap usage: 2,084,730 allocs, 2,084,661 frees, 378,319,925 bytes allocated ==40242== ==40242== LEAK SUMMARY: ==40242== definitely lost: 0 bytes in 0 blocks ==40242== indirectly lost: 0 bytes in 0 blocks ==40242== possibly lost: 0 bytes in 0 blocks ==40242== still reachable: 56 bytes in 3 blocks ==40242== suppressed: 16,921 bytes in 66 blocks ==40242== Reachable blocks (those to which a pointer was found) are not shown. ==40242== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40242== ==40242== For lists of detected and suppressed errors, rerun with: -s ==40242== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)