==40268== Memcheck, a memory error detector ==40268== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40268== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40268== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40268== Parent PID: 24230 ==40268== ==40268== ==40268== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40268== Open file descriptor 12: ==40268== at 0x10DF10BD: pipe (pipe.c:29) ==40268== by 0x1971007D: ??? ==40268== by 0x14CBB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40268== by 0x10957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40268== by 0x108F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40268== by 0xF5E7D38: PetscInitialize (pinit.c:924) ==40268== by 0xF153A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40268== by 0xF153A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40268== by 0x129A8D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40268== by 0x124B71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40268== by 0x1275D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40268== by 0x127468: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40268== by 0x127B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40268== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40268== ==40268== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40268== at 0x10DF5A5C: __open_nocancel (open64_nocancel.c:39) ==40268== by 0x10D79B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40268== by 0xF18B822: ??? ==40268== by 0xF18B96F: ??? ==40268== by 0x14D626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40268== by 0x14D62938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40268== by 0x14D18922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40268== by 0x14CBB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40268== by 0x10957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40268== by 0x108F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40268== by 0xF5E7D38: PetscInitialize (pinit.c:924) ==40268== by 0xF153A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40268== by 0xF153A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40268== by 0x129A8D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40268== by 0x124B71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40268== by 0x1275D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40268== by 0x127468: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40268== by 0x127B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40268== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40268== ==40268== Open file descriptor 145: ==40268== ==40268== ==40268== Open file descriptor 142: ==40268== ==40268== ==40268== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==40268== ==40268== ==40268== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40268== ==40268== ==40268== ==40268== HEAP SUMMARY: ==40268== in use at exit: 16,977 bytes in 69 blocks ==40268== total heap usage: 1,384,387 allocs, 1,384,318 frees, 66,697,691 bytes allocated ==40268== ==40268== LEAK SUMMARY: ==40268== definitely lost: 0 bytes in 0 blocks ==40268== indirectly lost: 0 bytes in 0 blocks ==40268== possibly lost: 0 bytes in 0 blocks ==40268== still reachable: 56 bytes in 3 blocks ==40268== suppressed: 16,921 bytes in 66 blocks ==40268== Reachable blocks (those to which a pointer was found) are not shown. ==40268== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40268== ==40268== For lists of detected and suppressed errors, rerun with: -s ==40268== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)