==39713== Memcheck, a memory error detector ==39713== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39713== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39713== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info ==39713== Parent PID: 24230 ==39713== ==39713== ==39713== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39713== Open file descriptor 12: ==39713== at 0x4CC60BD: pipe (pipe.c:29) ==39713== by 0xAEBF07D: ??? ==39713== by 0x644E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39713== by 0x4EC1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39713== by 0x4E5AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39713== by 0x5048D38: PetscInitialize (pinit.c:924) ==39713== by 0x4909A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39713== by 0x4909A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39713== by 0x113F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39713== by 0x10F451: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39713== by 0x111E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39713== by 0x111CBE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39713== by 0x112389: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39713== by 0x10D735: main (TestStepSizeException.cpp:19) ==39713== ==39713== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39713== at 0x4CCAA5C: __open_nocancel (open64_nocancel.c:39) ==39713== by 0x4C4EB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39713== by 0x4941822: ??? ==39713== by 0x494196F: ??? ==39713== by 0x64F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39713== by 0x64F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39713== by 0x64A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39713== by 0x644E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39713== by 0x4EC1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39713== by 0x4E5AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39713== by 0x5048D38: PetscInitialize (pinit.c:924) ==39713== by 0x4909A25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39713== by 0x4909A73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39713== by 0x113F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39713== by 0x10F451: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39713== by 0x111E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39713== by 0x111CBE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39713== by 0x112389: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39713== by 0x10D735: main (TestStepSizeException.cpp:19) ==39713== ==39713== Open file descriptor 145: ==39713== ==39713== ==39713== Open file descriptor 142: ==39713== ==39713== ==39713== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt ==39713== ==39713== ==39713== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39713== ==39713== ==39713== ==39713== HEAP SUMMARY: ==39713== in use at exit: 16,554 bytes in 72 blocks ==39713== total heap usage: 28,238 allocs, 28,166 frees, 5,991,145 bytes allocated ==39713== ==39713== LEAK SUMMARY: ==39713== definitely lost: 0 bytes in 0 blocks ==39713== indirectly lost: 0 bytes in 0 blocks ==39713== possibly lost: 0 bytes in 0 blocks ==39713== still reachable: 24 bytes in 2 blocks ==39713== suppressed: 16,530 bytes in 70 blocks ==39713== Reachable blocks (those to which a pointer was found) are not shown. ==39713== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39713== ==39713== For lists of detected and suppressed errors, rerun with: -s ==39713== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)