==26004== Memcheck, a memory error detector ==26004== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26004== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26004== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26004== Parent PID: 24230 ==26004== ==26004== ==26004== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26004== Open file descriptor 12: ==26004== at 0xDB990BD: pipe (pipe.c:29) ==26004== by 0x1971107D: ??? ==26004== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26004== by 0xFE4A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26004== by 0xFDE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26004== by 0xFF91D38: PetscInitialize (pinit.c:924) ==26004== by 0xD79CA25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26004== by 0xD79CA73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26004== by 0x123340: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26004== by 0x11E887: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26004== by 0x12136A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26004== by 0x12125D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26004== by 0x1218A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26004== by 0x11CF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26004== ==26004== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26004== at 0xDB9DA5C: __open_nocancel (open64_nocancel.c:39) ==26004== by 0xDB21B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26004== by 0xD7D4822: ??? ==26004== by 0xD7D496F: ??? ==26004== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26004== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26004== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26004== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26004== by 0xFE4A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26004== by 0xFDE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26004== by 0xFF91D38: PetscInitialize (pinit.c:924) ==26004== by 0xD79CA25: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26004== by 0xD79CA73: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26004== by 0x123340: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26004== by 0x11E887: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26004== by 0x12136A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26004== by 0x12125D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26004== by 0x1218A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26004== by 0x11CF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26004== ==26004== Open file descriptor 145: ==26004== ==26004== ==26004== Open file descriptor 142: ==26004== ==26004== ==26004== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26004== ==26004== ==26004== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26004== ==26004== ==26004== ==26004== HEAP SUMMARY: ==26004== in use at exit: 17,018 bytes in 72 blocks ==26004== total heap usage: 41,723 allocs, 41,651 frees, 7,151,745 bytes allocated ==26004== ==26004== LEAK SUMMARY: ==26004== definitely lost: 0 bytes in 0 blocks ==26004== indirectly lost: 0 bytes in 0 blocks ==26004== possibly lost: 0 bytes in 0 blocks ==26004== still reachable: 24 bytes in 2 blocks ==26004== suppressed: 16,994 bytes in 70 blocks ==26004== Reachable blocks (those to which a pointer was found) are not shown. ==26004== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26004== ==26004== For lists of detected and suppressed errors, rerun with: -s ==26004== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)