==26373== Memcheck, a memory error detector ==26373== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26373== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26373== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26373== Parent PID: 24419 ==26373== ==26373== ==26373== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26373== Open file descriptor 12: ==26373== at 0xF8F20BD: pipe (pipe.c:29) ==26373== by 0x196DB07D: ??? ==26373== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26373== by 0x1015C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26373== by 0x100F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26373== by 0x102A1D38: PetscInitialize (pinit.c:924) ==26373== by 0xF1AF56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26373== by 0xF1AF5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26373== by 0x2E24B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26373== by 0x2D90D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26373== by 0x2DD936: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26373== by 0x2DD7D6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26373== by 0x2DDE6D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26373== by 0x2D74F5: main (TestNodeBasedCellPopulation.cpp:19) ==26373== ==26373== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26373== at 0xF8F6A5C: __open_nocancel (open64_nocancel.c:39) ==26373== by 0xF87AB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26373== by 0xF1E6822: ??? ==26373== by 0xF1E696F: ??? ==26373== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26373== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26373== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26373== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26373== by 0x1015C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26373== by 0x100F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26373== by 0x102A1D38: PetscInitialize (pinit.c:924) ==26373== by 0xF1AF56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26373== by 0xF1AF5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26373== by 0x2E24B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26373== by 0x2D90D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26373== by 0x2DD936: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26373== by 0x2DD7D6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26373== by 0x2DDE6D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26373== by 0x2D74F5: main (TestNodeBasedCellPopulation.cpp:19) ==26373== ==26373== Open file descriptor 145: ==26373== ==26373== ==26373== Open file descriptor 142: ==26373== ==26373== ==26373== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==26373== ==26373== ==26373== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26373== ==26373== ==26373== ==26373== HEAP SUMMARY: ==26373== in use at exit: 35,142 bytes in 286 blocks ==26373== total heap usage: 30,275,178 allocs, 30,274,892 frees, 1,833,840,693 bytes allocated ==26373== ==26373== LEAK SUMMARY: ==26373== definitely lost: 0 bytes in 0 blocks ==26373== indirectly lost: 0 bytes in 0 blocks ==26373== possibly lost: 0 bytes in 0 blocks ==26373== still reachable: 56 bytes in 3 blocks ==26373== suppressed: 35,086 bytes in 283 blocks ==26373== Reachable blocks (those to which a pointer was found) are not shown. ==26373== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26373== ==26373== For lists of detected and suppressed errors, rerun with: -s ==26373== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)