==41337== Memcheck, a memory error detector ==41337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41337== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==41337== Parent PID: 25025 ==41337== ==41337== ==41337== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41337== Open file descriptor 12: ==41337== at 0x1120A0BD: pipe (pipe.c:29) ==41337== by 0x1B39E07D: ??? ==41337== by 0x143E54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41337== by 0x11B03418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0x11A9CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0x11C48D38: PetscInitialize (pinit.c:924) ==41337== by 0x10A4556F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41337== by 0x10A455BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41337== by 0x23B27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41337== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41337== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41337== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41337== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41337== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==41337== ==41337== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41337== at 0x1120EA5C: __open_nocancel (open64_nocancel.c:39) ==41337== by 0x11192B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41337== by 0x611C822: ??? ==41337== by 0x611C96F: ??? ==41337== by 0x1448A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41337== by 0x1448A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41337== by 0x14440922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41337== by 0x143E52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41337== by 0x11B03418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0x11A9CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0x11C48D38: PetscInitialize (pinit.c:924) ==41337== by 0x10A4556F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41337== by 0x10A455BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41337== by 0x23B27C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41337== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41337== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41337== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41337== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41337== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==41337== ==41337== Open file descriptor 145: ==41337== ==41337== ==41337== Open file descriptor 142: ==41337== ==41337== ==41337== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==41337== ==41337== ==41337== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41337== ==41337== ==41337== ==41337== HEAP SUMMARY: ==41337== in use at exit: 35,158 bytes in 286 blocks ==41337== total heap usage: 6,373,929 allocs, 6,373,643 frees, 743,636,344 bytes allocated ==41337== ==41337== LEAK SUMMARY: ==41337== definitely lost: 0 bytes in 0 blocks ==41337== indirectly lost: 0 bytes in 0 blocks ==41337== possibly lost: 0 bytes in 0 blocks ==41337== still reachable: 56 bytes in 3 blocks ==41337== suppressed: 35,102 bytes in 283 blocks ==41337== Reachable blocks (those to which a pointer was found) are not shown. ==41337== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41337== ==41337== For lists of detected and suppressed errors, rerun with: -s ==41337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)