==40856== Memcheck, a memory error detector ==40856== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40856== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40856== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40856== Parent PID: 25025 ==40856== ==40856== ==40856== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40856== Open file descriptor 12: ==40856== at 0xF81F0BD: pipe (pipe.c:29) ==40856== by 0x196DB07D: ??? ==40856== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40856== by 0x10118418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40856== by 0x100B1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40856== by 0x102A1D38: PetscInitialize (pinit.c:924) ==40856== by 0xF12056F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40856== by 0xF1205BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40856== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40856== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40856== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40856== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40856== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40856== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40856== ==40856== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40856== at 0xF823A5C: __open_nocancel (open64_nocancel.c:39) ==40856== by 0xF7A7B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40856== by 0xF157822: ??? ==40856== by 0xF15796F: ??? ==40856== by 0x12BF56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40856== by 0x12BF5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40856== by 0x12BAB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40856== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40856== by 0x10118418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40856== by 0x100B1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40856== by 0x102A1D38: PetscInitialize (pinit.c:924) ==40856== by 0xF12056F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40856== by 0xF1205BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40856== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40856== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40856== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40856== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40856== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40856== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40856== ==40856== Open file descriptor 145: ==40856== ==40856== ==40856== Open file descriptor 142: ==40856== ==40856== ==40856== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40856== ==40856== ==40856== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40856== ==40856== ==40856== ==40856== HEAP SUMMARY: ==40856== in use at exit: 35,142 bytes in 286 blocks ==40856== total heap usage: 5,220,498 allocs, 5,220,212 frees, 451,622,850 bytes allocated ==40856== ==40856== LEAK SUMMARY: ==40856== definitely lost: 0 bytes in 0 blocks ==40856== indirectly lost: 0 bytes in 0 blocks ==40856== possibly lost: 0 bytes in 0 blocks ==40856== still reachable: 56 bytes in 3 blocks ==40856== suppressed: 35,086 bytes in 283 blocks ==40856== Reachable blocks (those to which a pointer was found) are not shown. ==40856== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40856== ==40856== For lists of detected and suppressed errors, rerun with: -s ==40856== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)