==40371== Memcheck, a memory error detector ==40371== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40371== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40371== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info ==40371== Parent PID: 24649 ==40371== ==40371== ==40371== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40371== Open file descriptor 12: ==40371== at 0x117C30BD: pipe (pipe.c:29) ==40371== by 0x1A4A007D: ??? ==40371== by 0x1564E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40371== by 0x11329418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40371== by 0x112C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40371== by 0xFFB9D38: PetscInitialize (pinit.c:924) ==40371== by 0xFAE456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40371== by 0xFAE45BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40371== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40371== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40371== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40371== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40371== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40371== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) ==40371== ==40371== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40371== at 0x117C7A5C: __open_nocancel (open64_nocancel.c:39) ==40371== by 0x1174BB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40371== by 0xFB1B822: ??? ==40371== by 0xFB1B96F: ??? ==40371== by 0x156F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40371== by 0x156F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40371== by 0x156A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40371== by 0x1564E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40371== by 0x11329418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40371== by 0x112C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40371== by 0xFFB9D38: PetscInitialize (pinit.c:924) ==40371== by 0xFAE456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40371== by 0xFAE45BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40371== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40371== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40371== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40371== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40371== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40371== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) ==40371== ==40371== Open file descriptor 145: ==40371== ==40371== ==40371== Open file descriptor 142: ==40371== ==40371== ==40371== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt ==40371== ==40371== ==40371== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40371== ==40371== ==40371== ==40371== HEAP SUMMARY: ==40371== in use at exit: 35,142 bytes in 286 blocks ==40371== total heap usage: 9,023,036 allocs, 9,022,750 frees, 871,010,874 bytes allocated ==40371== ==40371== LEAK SUMMARY: ==40371== definitely lost: 0 bytes in 0 blocks ==40371== indirectly lost: 0 bytes in 0 blocks ==40371== possibly lost: 0 bytes in 0 blocks ==40371== still reachable: 56 bytes in 3 blocks ==40371== suppressed: 35,086 bytes in 283 blocks ==40371== Reachable blocks (those to which a pointer was found) are not shown. ==40371== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40371== ==40371== For lists of detected and suppressed errors, rerun with: -s ==40371== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)