==40932== Memcheck, a memory error detector ==40932== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40932== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40932== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40932== Parent PID: 24649 ==40932== ==40932== ==40932== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40932== Open file descriptor 12: ==40932== at 0x1148A0BD: pipe (pipe.c:29) ==40932== by 0x1BD6007D: ??? ==40932== by 0x15EFC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40932== by 0x10D92418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40932== by 0x10D2BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40932== by 0x6277D38: PetscInitialize (pinit.c:924) ==40932== by 0x10C7556F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40932== by 0x10C755BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40932== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40932== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40932== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40932== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40932== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40932== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40932== ==40932== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40932== at 0x1148EA5C: __open_nocancel (open64_nocancel.c:39) ==40932== by 0x11412B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40932== by 0x611C822: ??? ==40932== by 0x611C96F: ??? ==40932== by 0x15FA16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40932== by 0x15FA1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40932== by 0x15F57922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40932== by 0x15EFC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40932== by 0x10D92418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40932== by 0x10D2BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40932== by 0x6277D38: PetscInitialize (pinit.c:924) ==40932== by 0x10C7556F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40932== by 0x10C755BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40932== by 0x19253D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40932== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40932== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40932== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40932== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40932== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40932== ==40932== Open file descriptor 145: ==40932== ==40932== ==40932== Open file descriptor 142: ==40932== ==40932== ==40932== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40932== ==40932== ==40932== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40932== ==40932== ==40932== ==40932== HEAP SUMMARY: ==40932== in use at exit: 35,295 bytes in 291 blocks ==40932== total heap usage: 846,191 allocs, 845,900 frees, 129,864,865 bytes allocated ==40932== ==40932== LEAK SUMMARY: ==40932== definitely lost: 0 bytes in 0 blocks ==40932== indirectly lost: 0 bytes in 0 blocks ==40932== possibly lost: 0 bytes in 0 blocks ==40932== still reachable: 120 bytes in 4 blocks ==40932== suppressed: 35,175 bytes in 287 blocks ==40932== Reachable blocks (those to which a pointer was found) are not shown. ==40932== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40932== ==40932== For lists of detected and suppressed errors, rerun with: -s ==40932== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)