==40139== Memcheck, a memory error detector ==40139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40139== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSemBasedSimulation -malloc_debug -malloc_dump -memory_info ==40139== Parent PID: 24649 ==40139== ==40139== ==40139== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40139== Open file descriptor 12: ==40139== at 0x1030E0BD: pipe (pipe.c:29) ==40139== by 0x1A4A007D: ??? ==40139== by 0x134F74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40139== by 0x10C07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40139== by 0x10BA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40139== by 0x10D4CD38: PetscInitialize (pinit.c:924) ==40139== by 0xFAE456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40139== by 0xFAE45BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40139== by 0x20E912: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40139== by 0x20871F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40139== by 0x20BAC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40139== by 0x20B9BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40139== by 0x20BFD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40139== by 0x206F15: main (TestSemBasedSimulation.cpp:18) ==40139== ==40139== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40139== at 0x10312A5C: __open_nocancel (open64_nocancel.c:39) ==40139== by 0x10296B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40139== by 0xFB1B822: ??? ==40139== by 0xFB1B96F: ??? ==40139== by 0x1359C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40139== by 0x1359C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40139== by 0x13552922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40139== by 0x134F72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40139== by 0x10C07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40139== by 0x10BA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40139== by 0x10D4CD38: PetscInitialize (pinit.c:924) ==40139== by 0xFAE456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40139== by 0xFAE45BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40139== by 0x20E912: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40139== by 0x20871F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40139== by 0x20BAC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40139== by 0x20B9BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40139== by 0x20BFD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40139== by 0x206F15: main (TestSemBasedSimulation.cpp:18) ==40139== ==40139== Open file descriptor 145: ==40139== ==40139== ==40139== Open file descriptor 142: ==40139== ==40139== ==40139== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSemBasedSimulation_valgrind.txt ==40139== ==40139== ==40139== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40139== ==40139== ==40139== ==40139== HEAP SUMMARY: ==40139== in use at exit: 35,215 bytes in 290 blocks ==40139== total heap usage: 141,868 allocs, 141,578 frees, 18,888,242 bytes allocated ==40139== ==40139== LEAK SUMMARY: ==40139== definitely lost: 0 bytes in 0 blocks ==40139== indirectly lost: 0 bytes in 0 blocks ==40139== possibly lost: 0 bytes in 0 blocks ==40139== still reachable: 56 bytes in 3 blocks ==40139== suppressed: 35,159 bytes in 287 blocks ==40139== Reachable blocks (those to which a pointer was found) are not shown. ==40139== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40139== ==40139== For lists of detected and suppressed errors, rerun with: -s ==40139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)