==30296== Memcheck, a memory error detector ==30296== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==30296== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==30296== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info ==30296== Parent PID: 15631 ==30296== ==30296== ==30296== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==30296== Open file descriptor 10: /dev/shm/open_mpi.0000 ==30296== at 0x132FF536: __open_nocancel (open64_nocancel.c:39) ==30296== by 0x13283BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==30296== by 0x1883F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1883FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1883EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1883EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1870E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x108240E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1085B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0xF825446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==30296== by 0xEED02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==30296== by 0xEED0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==30296== by 0x403A363: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==30296== by 0x4034271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==30296== by 0x4036FAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==30296== by 0x4036E41: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==30296== by 0x403753B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==30296== by 0x40326B8: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==30296== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==30296== Open file descriptor 9: ==30296== at 0x1330D96B: eventfd (syscall-template.S:120) ==30296== by 0x1889F188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x1889D395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x1889D704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x1889D9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x188041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1870E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x108240E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1085B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0xF825446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==30296== by 0xEED02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==30296== by 0xEED0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==30296== by 0x403A363: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==30296== by 0x4034271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==30296== by 0x4036FAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==30296== by 0x4036E41: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==30296== by 0x403753B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==30296== by 0x40326B8: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==30296== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==30296== Open file descriptor 8: ==30296== at 0x132FE2BB: pipe2 (syscall-template.S:120) ==30296== by 0x1889EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188A1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188A1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x1889D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x188041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1870E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x108240E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1085B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0xF825446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==30296== by 0xEED02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==30296== by 0xEED0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==30296== by 0x403A363: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==30296== by 0x4034271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==30296== by 0x4036FAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==30296== by 0x4036E41: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==30296== by 0x403753B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==30296== by 0x40326B8: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==30296== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==30296== Open file descriptor 7: ==30296== at 0x132FE2BB: pipe2 (syscall-template.S:120) ==30296== by 0x1889EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188A1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188A1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x1889D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x188041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1870E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x108240E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1085B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0xF825446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==30296== by 0xEED02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==30296== by 0xEED0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==30296== by 0x403A363: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==30296== by 0x4034271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==30296== by 0x4036FAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==30296== by 0x4036E41: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==30296== by 0x403753B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==30296== by 0x40326B8: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==30296== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==30296== Open file descriptor 6: ==30296== at 0x1330E46B: epoll_create1 (syscall-template.S:120) ==30296== by 0x188A16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x1889D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==30296== by 0x188040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x188041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x1870E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==30296== by 0x108240E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1082118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0x1085B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==30296== by 0xF825446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==30296== by 0xEED02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==30296== by 0xEED0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==30296== by 0x403A363: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==30296== by 0x4034271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==30296== by 0x4036FAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==30296== by 0x4036E41: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==30296== by 0x403753B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==30296== by 0x40326B8: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==30296== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==30296== ==30296== HEAP SUMMARY: ==30296== in use at exit: 127,059 bytes in 910 blocks ==30296== total heap usage: 665,007 allocs, 664,097 frees, 222,760,206 bytes allocated ==30296== ==30296== LEAK SUMMARY: ==30296== definitely lost: 0 bytes in 0 blocks ==30296== indirectly lost: 0 bytes in 0 blocks ==30296== possibly lost: 0 bytes in 0 blocks ==30296== still reachable: 11,981 bytes in 45 blocks ==30296== suppressed: 115,078 bytes in 865 blocks ==30296== Reachable blocks (those to which a pointer was found) are not shown. ==30296== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==30296== ==30296== For lists of detected and suppressed errors, rerun with: -s ==30296== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)