==14423== Memcheck, a memory error detector ==14423== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14423== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14423== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14423== Parent PID: 13899 ==14423== ==14423== ==14423== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14423== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14423== at 0x14CFB536: __open_nocancel (open64_nocancel.c:39) ==14423== by 0x14C7FBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14423== by 0x1A26D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A26DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A26CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A26CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A13C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x144B20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144AF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144E9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14423== by 0x143EA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14423== by 0x143EA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14423== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14423== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14423== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14423== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14423== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14423== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14423== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14423== Open file descriptor 9: ==14423== at 0x14D0996B: eventfd (syscall-template.S:120) ==14423== by 0x1A2CD188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CB395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CB704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CB9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x144B20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144AF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144E9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14423== by 0x143EA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14423== by 0x143EA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14423== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14423== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14423== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14423== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14423== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14423== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14423== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14423== Open file descriptor 8: ==14423== at 0x14CFA2BB: pipe2 (syscall-template.S:120) ==14423== by 0x1A2CCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x144B20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144AF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144E9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14423== by 0x143EA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14423== by 0x143EA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14423== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14423== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14423== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14423== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14423== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14423== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14423== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14423== Open file descriptor 7: ==14423== at 0x14CFA2BB: pipe2 (syscall-template.S:120) ==14423== by 0x1A2CCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x144B20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144AF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144E9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14423== by 0x143EA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14423== by 0x143EA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14423== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14423== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14423== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14423== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14423== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14423== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14423== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14423== Open file descriptor 5: ==14423== at 0x14D0A46B: epoll_create1 (syscall-template.S:120) ==14423== by 0x1A2CF6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2CB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14423== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14423== by 0x144B20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144B82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144AF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x144E9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14423== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14423== by 0x143EA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14423== by 0x143EA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14423== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14423== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14423== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14423== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14423== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14423== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14423== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14423== ==14423== HEAP SUMMARY: ==14423== in use at exit: 126,945 bytes in 905 blocks ==14423== total heap usage: 1,799,663 allocs, 1,798,758 frees, 118,227,436 bytes allocated ==14423== ==14423== LEAK SUMMARY: ==14423== definitely lost: 0 bytes in 0 blocks ==14423== indirectly lost: 0 bytes in 0 blocks ==14423== possibly lost: 0 bytes in 0 blocks ==14423== still reachable: 11,957 bytes in 44 blocks ==14423== suppressed: 114,988 bytes in 861 blocks ==14423== Reachable blocks (those to which a pointer was found) are not shown. ==14423== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14423== ==14423== For lists of detected and suppressed errors, rerun with: -s ==14423== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)