==15860== Memcheck, a memory error detector ==15860== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15860== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15860== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info ==15860== Parent PID: 15807 ==15860== ==15860== ==15860== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15860== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15860== at 0x69BA536: __open_nocancel (open64_nocancel.c:39) ==15860== by 0x693EBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15860== by 0x9B4789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B47A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B46C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B46F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9A16159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x62530E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x62592C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x628A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x5231446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15860== by 0x49442D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15860== by 0x4944327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15860== by 0x40116A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15860== by 0x400C7ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15860== by 0x400F422: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15860== by 0x400F250: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15860== by 0x400F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15860== by 0x400ABB2: main (TestFileFinder.cpp:19) ==15860== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15860== Open file descriptor 9: ==15860== at 0x69C896B: eventfd (syscall-template.S:120) ==15860== by 0x9BA7188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA5395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA5704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA59F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9B0C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B0C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9A16120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x62530E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x62592C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x628A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x5231446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15860== by 0x49442D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15860== by 0x4944327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15860== by 0x40116A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15860== by 0x400C7ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15860== by 0x400F422: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15860== by 0x400F250: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15860== by 0x400F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15860== by 0x400ABB2: main (TestFileFinder.cpp:19) ==15860== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15860== Open file descriptor 8: ==15860== at 0x69B92BB: pipe2 (syscall-template.S:120) ==15860== by 0x9BA6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9B0C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B0C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9A16120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x62530E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x62592C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x628A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x5231446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15860== by 0x49442D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15860== by 0x4944327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15860== by 0x40116A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15860== by 0x400C7ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15860== by 0x400F422: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15860== by 0x400F250: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15860== by 0x400F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15860== by 0x400ABB2: main (TestFileFinder.cpp:19) ==15860== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15860== Open file descriptor 7: ==15860== at 0x69B92BB: pipe2 (syscall-template.S:120) ==15860== by 0x9BA6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9B0C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B0C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9A16120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x62530E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x62592C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x628A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x5231446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15860== by 0x49442D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15860== by 0x4944327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15860== by 0x40116A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15860== by 0x400C7ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15860== by 0x400F422: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15860== by 0x400F250: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15860== by 0x400F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15860== by 0x400ABB2: main (TestFileFinder.cpp:19) ==15860== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15860== Open file descriptor 4: ==15860== at 0x69C946B: epoll_create1 (syscall-template.S:120) ==15860== by 0x9BA96FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9BA58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15860== by 0x9B0C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9B0C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x9A16120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15860== by 0x62530E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x62592C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x625018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x628A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15860== by 0x5231446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15860== by 0x49442D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15860== by 0x4944327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15860== by 0x40116A5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15860== by 0x400C7ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15860== by 0x400F422: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15860== by 0x400F250: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15860== by 0x400F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15860== by 0x400ABB2: main (TestFileFinder.cpp:19) ==15860== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15860== ==15860== HEAP SUMMARY: ==15860== in use at exit: 124,540 bytes in 897 blocks ==15860== total heap usage: 28,637 allocs, 27,740 frees, 11,988,566 bytes allocated ==15860== ==15860== LEAK SUMMARY: ==15860== definitely lost: 0 bytes in 0 blocks ==15860== indirectly lost: 0 bytes in 0 blocks ==15860== possibly lost: 0 bytes in 0 blocks ==15860== still reachable: 10,073 bytes in 40 blocks ==15860== suppressed: 114,467 bytes in 857 blocks ==15860== Reachable blocks (those to which a pointer was found) are not shown. ==15860== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15860== ==15860== For lists of detected and suppressed errors, rerun with: -s ==15860== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)