==16969== Memcheck, a memory error detector
==16969== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16969== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16969== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info
==16969== Parent PID: 14702
==16969== 
==16969== 
==16969== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16969== Open file descriptor 10: /dev/shm/open_mpi.0000
==16969==    at 0xC675536: __open_nocancel (open64_nocancel.c:39)
==16969==    by 0xC5F9BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16969==    by 0x10F1A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10F1AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10F19C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10F19F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10DE9159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0xC9C10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9BE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9F8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xD9AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16969==    by 0xC22B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16969==    by 0xC22B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16969==    by 0x401C404: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16969==    by 0x4017001: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16969==    by 0x4019CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16969==    by 0x4019AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16969==    by 0x401A29B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16969==    by 0x4015038: main (TestMonodomainWithSvi.cpp:19)
==16969== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16969== Open file descriptor 9:
==16969==    at 0xC68396B: eventfd (syscall-template.S:120)
==16969==    by 0x10F7C188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7A395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7A704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7A9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10EDF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10EDF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10DE9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0xC9C10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9BE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9F8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xD9AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16969==    by 0xC22B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16969==    by 0xC22B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16969==    by 0x401C404: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16969==    by 0x4017001: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16969==    by 0x4019CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16969==    by 0x4019AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16969==    by 0x401A29B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16969==    by 0x4015038: main (TestMonodomainWithSvi.cpp:19)
==16969== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16969== Open file descriptor 8:
==16969==    at 0xC6742BB: pipe2 (syscall-template.S:120)
==16969==    by 0x10F7BF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7E579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7E774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10EDF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10EDF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10DE9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0xC9C10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9BE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9F8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xD9AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16969==    by 0xC22B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16969==    by 0xC22B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16969==    by 0x401C404: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16969==    by 0x4017001: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16969==    by 0x4019CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16969==    by 0x4019AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16969==    by 0x401A29B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16969==    by 0x4015038: main (TestMonodomainWithSvi.cpp:19)
==16969== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16969== Open file descriptor 7:
==16969==    at 0xC6742BB: pipe2 (syscall-template.S:120)
==16969==    by 0x10F7BF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7E579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7E774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10EDF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10EDF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10DE9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0xC9C10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9BE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9F8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xD9AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16969==    by 0xC22B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16969==    by 0xC22B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16969==    by 0x401C404: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16969==    by 0x4017001: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16969==    by 0x4019CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16969==    by 0x4019AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16969==    by 0x401A29B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16969==    by 0x4015038: main (TestMonodomainWithSvi.cpp:19)
==16969== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16969== Open file descriptor 4:
==16969==    at 0xC68446B: epoll_create1 (syscall-template.S:120)
==16969==    by 0x10F7E6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10F7A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16969==    by 0x10EDF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10EDF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0x10DE9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16969==    by 0xC9C10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9C72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9BE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xC9F8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16969==    by 0xD9AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16969==    by 0xC22B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16969==    by 0xC22B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16969==    by 0x401C404: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16969==    by 0x4017001: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16969==    by 0x4019CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16969==    by 0x4019AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16969==    by 0x401A29B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16969==    by 0x4015038: main (TestMonodomainWithSvi.cpp:19)
==16969== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16969== 
==16969== HEAP SUMMARY:
==16969==     in use at exit: 129,265 bytes in 938 blocks
==16969==   total heap usage: 3,719,413 allocs, 3,718,475 frees, 466,850,446 bytes allocated
==16969== 
==16969== LEAK SUMMARY:
==16969==    definitely lost: 0 bytes in 0 blocks
==16969==    indirectly lost: 0 bytes in 0 blocks
==16969==      possibly lost: 0 bytes in 0 blocks
==16969==    still reachable: 11,957 bytes in 44 blocks
==16969==         suppressed: 117,308 bytes in 894 blocks
==16969== Reachable blocks (those to which a pointer was found) are not shown.
==16969== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16969== 
==16969== For lists of detected and suppressed errors, rerun with: -s
==16969== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 78 from 34)