==17071== Memcheck, a memory error detector
==17071== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==17071== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==17071== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info
==17071== Parent PID: 14702
==17071== 
==17071== 
==17071== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==17071== Open file descriptor 10: /dev/shm/open_mpi.0000
==17071==    at 0xC9F4536: __open_nocancel (open64_nocancel.c:39)
==17071==    by 0xC978BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==17071==    by 0x1132689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x11326A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x11325C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x11325F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x111F5159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0xCD400E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD4549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD462C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD3D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD77627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xDD2B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17071==    by 0xC5AC2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17071==    by 0xC5AC327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17071==    by 0x401AE74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17071==    by 0x4015641: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17071==    by 0x4017EEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17071==    by 0x4017D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17071==    by 0x401847B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17071==    by 0x4013A98: main (TestNeumannStimulus.cpp:18)
==17071== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17071== Open file descriptor 9:
==17071==    at 0xCA0296B: eventfd (syscall-template.S:120)
==17071==    by 0x11386188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x11384395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x11384704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x113849F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x112EB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x112EB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x111F5120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0xCD400E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD4549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD462C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD3D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD77627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xDD2B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17071==    by 0xC5AC2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17071==    by 0xC5AC327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17071==    by 0x401AE74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17071==    by 0x4015641: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17071==    by 0x4017EEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17071==    by 0x4017D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17071==    by 0x401847B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17071==    by 0x4013A98: main (TestNeumannStimulus.cpp:18)
==17071== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17071== Open file descriptor 8:
==17071==    at 0xC9F32BB: pipe2 (syscall-template.S:120)
==17071==    by 0x11385F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x11388579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x11388774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x113848AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x112EB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x112EB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x111F5120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0xCD400E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD4549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD462C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD3D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD77627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xDD2B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17071==    by 0xC5AC2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17071==    by 0xC5AC327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17071==    by 0x401AE74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17071==    by 0x4015641: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17071==    by 0x4017EEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17071==    by 0x4017D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17071==    by 0x401847B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17071==    by 0x4013A98: main (TestNeumannStimulus.cpp:18)
==17071== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17071== Open file descriptor 7:
==17071==    at 0xC9F32BB: pipe2 (syscall-template.S:120)
==17071==    by 0x11385F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x11388579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x11388774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x113848AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x112EB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x112EB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x111F5120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0xCD400E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD4549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD462C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD3D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD77627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xDD2B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17071==    by 0xC5AC2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17071==    by 0xC5AC327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17071==    by 0x401AE74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17071==    by 0x4015641: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17071==    by 0x4017EEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17071==    by 0x4017D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17071==    by 0x401847B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17071==    by 0x4013A98: main (TestNeumannStimulus.cpp:18)
==17071== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17071== Open file descriptor 6:
==17071==    at 0xCA0346B: epoll_create1 (syscall-template.S:120)
==17071==    by 0x113886FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x113848AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17071==    by 0x112EB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x112EB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0x111F5120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17071==    by 0xCD400E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD4549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD462C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD3D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xCD77627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17071==    by 0xDD2B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17071==    by 0xC5AC2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17071==    by 0xC5AC327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17071==    by 0x401AE74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17071==    by 0x4015641: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17071==    by 0x4017EEE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17071==    by 0x4017D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17071==    by 0x401847B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17071==    by 0x4013A98: main (TestNeumannStimulus.cpp:18)
==17071== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17071== 
==17071== HEAP SUMMARY:
==17071==     in use at exit: 129,336 bytes in 942 blocks
==17071==   total heap usage: 86,612 allocs, 85,670 frees, 24,171,837 bytes allocated
==17071== 
==17071== LEAK SUMMARY:
==17071==    definitely lost: 0 bytes in 0 blocks
==17071==    indirectly lost: 0 bytes in 0 blocks
==17071==      possibly lost: 0 bytes in 0 blocks
==17071==    still reachable: 11,957 bytes in 44 blocks
==17071==         suppressed: 117,379 bytes in 898 blocks
==17071== Reachable blocks (those to which a pointer was found) are not shown.
==17071== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==17071== 
==17071== For lists of detected and suppressed errors, rerun with: -s
==17071== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 39 from 34)