==16284== Memcheck, a memory error detector ==16284== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16284== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16284== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info ==16284== Parent PID: 14702 ==16284== ==16284== ==16284== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16284== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16284== at 0xA3B3536: __open_nocancel (open64_nocancel.c:39) ==16284== by 0xA337BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16284== by 0x11D1489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11D14A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11D13C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11D13F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11BE3159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x9C4C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C5149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C522C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C4918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C83627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x88FC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16284== by 0x9B542D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16284== by 0x9B54327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16284== by 0x400F19B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16284== by 0x400A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16284== by 0x400CD6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16284== by 0x400CB98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16284== by 0x400D2DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16284== by 0x4008732: main (TestSteadyStateRunner.cpp:19) ==16284== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16284== Open file descriptor 9: ==16284== at 0xA3C196B: eventfd (syscall-template.S:120) ==16284== by 0x11D74188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D72395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D72704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D729F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11CD90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11CD91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11BE3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x9C4C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C5149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C522C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C4918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C83627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x88FC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16284== by 0x9B542D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16284== by 0x9B54327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16284== by 0x400F19B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16284== by 0x400A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16284== by 0x400CD6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16284== by 0x400CB98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16284== by 0x400D2DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16284== by 0x4008732: main (TestSteadyStateRunner.cpp:19) ==16284== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16284== Open file descriptor 8: ==16284== at 0xA3B22BB: pipe2 (syscall-template.S:120) ==16284== by 0x11D73F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D76579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D76774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D728AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11CD90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11CD91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11BE3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x9C4C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C5149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C522C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C4918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C83627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x88FC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16284== by 0x9B542D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16284== by 0x9B54327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16284== by 0x400F19B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16284== by 0x400A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16284== by 0x400CD6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16284== by 0x400CB98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16284== by 0x400D2DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16284== by 0x4008732: main (TestSteadyStateRunner.cpp:19) ==16284== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16284== Open file descriptor 7: ==16284== at 0xA3B22BB: pipe2 (syscall-template.S:120) ==16284== by 0x11D73F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D76579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D76774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D728AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11CD90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11CD91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11BE3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x9C4C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C5149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C522C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C4918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C83627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x88FC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16284== by 0x9B542D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16284== by 0x9B54327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16284== by 0x400F19B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16284== by 0x400A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16284== by 0x400CD6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16284== by 0x400CB98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16284== by 0x400D2DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16284== by 0x4008732: main (TestSteadyStateRunner.cpp:19) ==16284== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16284== Open file descriptor 5: ==16284== at 0xA3C246B: epoll_create1 (syscall-template.S:120) ==16284== by 0x11D766FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11D728AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16284== by 0x11CD90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11CD91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x11BE3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16284== by 0x9C4C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C5149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C522C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C4918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x9C83627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16284== by 0x88FC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16284== by 0x9B542D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16284== by 0x9B54327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16284== by 0x400F19B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16284== by 0x400A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16284== by 0x400CD6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16284== by 0x400CB98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16284== by 0x400D2DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16284== by 0x4008732: main (TestSteadyStateRunner.cpp:19) ==16284== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16284== ==16284== HEAP SUMMARY: ==16284== in use at exit: 128,833 bytes in 929 blocks ==16284== total heap usage: 30,518 allocs, 29,589 frees, 10,925,535 bytes allocated ==16284== ==16284== LEAK SUMMARY: ==16284== definitely lost: 0 bytes in 0 blocks ==16284== indirectly lost: 0 bytes in 0 blocks ==16284== possibly lost: 0 bytes in 0 blocks ==16284== still reachable: 11,957 bytes in 44 blocks ==16284== suppressed: 116,876 bytes in 885 blocks ==16284== Reachable blocks (those to which a pointer was found) are not shown. ==16284== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16284== ==16284== For lists of detected and suppressed errors, rerun with: -s ==16284== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)