==17003== Memcheck, a memory error detector
==17003== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==17003== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==17003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info
==17003== Parent PID: 16132
==17003== 
==17003== 
==17003== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==17003== Open file descriptor 10: /dev/shm/open_mpi.0000
==17003==    at 0xAFD0536: __open_nocancel (open64_nocancel.c:39)
==17003==    by 0xAF54BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==17003==    by 0xFF9D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF9DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF9CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF9CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFE6C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xA7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0x5352446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17003==    by 0xA6C12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17003==    by 0xA6C1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17003==    by 0x405A844: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17003==    by 0x4054091: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17003==    by 0x4057DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17003==    by 0x4057BF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17003==    by 0x405839B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17003==    by 0x40511D8: main (TestCompressibleNonlinearElasticitySolver.cpp:19)
==17003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17003== Open file descriptor 9:
==17003==    at 0xAFDE96B: eventfd (syscall-template.S:120)
==17003==    by 0xFFFD188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFB395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFB704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFB9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFF620D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF621E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFE6C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xA7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0x5352446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17003==    by 0xA6C12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17003==    by 0xA6C1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17003==    by 0x405A844: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17003==    by 0x4054091: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17003==    by 0x4057DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17003==    by 0x4057BF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17003==    by 0x405839B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17003==    by 0x40511D8: main (TestCompressibleNonlinearElasticitySolver.cpp:19)
==17003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17003== Open file descriptor 8:
==17003==    at 0xAFCF2BB: pipe2 (syscall-template.S:120)
==17003==    by 0xFFFCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFF620D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF621E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFE6C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xA7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0x5352446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17003==    by 0xA6C12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17003==    by 0xA6C1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17003==    by 0x405A844: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17003==    by 0x4054091: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17003==    by 0x4057DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17003==    by 0x4057BF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17003==    by 0x405839B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17003==    by 0x40511D8: main (TestCompressibleNonlinearElasticitySolver.cpp:19)
==17003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17003== Open file descriptor 7:
==17003==    at 0xAFCF2BB: pipe2 (syscall-template.S:120)
==17003==    by 0xFFFCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFF620D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF621E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFE6C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xA7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0x5352446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17003==    by 0xA6C12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17003==    by 0xA6C1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17003==    by 0x405A844: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17003==    by 0x4054091: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17003==    by 0x4057DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17003==    by 0x4057BF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17003==    by 0x405839B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17003==    by 0x40511D8: main (TestCompressibleNonlinearElasticitySolver.cpp:19)
==17003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17003== Open file descriptor 5:
==17003==    at 0xAFDF46B: epoll_create1 (syscall-template.S:120)
==17003==    by 0xFFFF6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFFFB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17003==    by 0xFF620D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFF621E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xFE6C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17003==    by 0xA7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0xA7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17003==    by 0x5352446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17003==    by 0xA6C12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17003==    by 0xA6C1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17003==    by 0x405A844: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17003==    by 0x4054091: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17003==    by 0x4057DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17003==    by 0x4057BF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17003==    by 0x405839B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17003==    by 0x40511D8: main (TestCompressibleNonlinearElasticitySolver.cpp:19)
==17003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17003== 
==17003== HEAP SUMMARY:
==17003==     in use at exit: 126,411 bytes in 901 blocks
==17003==   total heap usage: 290,611 allocs, 289,710 frees, 54,036,053 bytes allocated
==17003== 
==17003== LEAK SUMMARY:
==17003==    definitely lost: 0 bytes in 0 blocks
==17003==    indirectly lost: 0 bytes in 0 blocks
==17003==      possibly lost: 0 bytes in 0 blocks
==17003==    still reachable: 11,917 bytes in 44 blocks
==17003==         suppressed: 114,494 bytes in 857 blocks
==17003== Reachable blocks (those to which a pointer was found) are not shown.
==17003== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==17003== 
==17003== For lists of detected and suppressed errors, rerun with: -s
==17003== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)