==16962== Memcheck, a memory error detector ==16962== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16962== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16962== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info ==16962== Parent PID: 16132 ==16962== ==16962== ==16962== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16962== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16962== at 0x904F536: __open_nocancel (open64_nocancel.c:39) ==16962== by 0x8FD3BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16962== by 0xD82389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD823A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD822C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD822F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD6F2159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0x92CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x9302627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0xA2B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16962== by 0x695D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16962== by 0x695D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16962== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16962== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16962== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16962== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16962== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16962== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==16962== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16962== Open file descriptor 9: ==16962== at 0x905D96B: eventfd (syscall-template.S:120) ==16962== by 0xD883188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD881395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD881704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD8819F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD7E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD7E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD6F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0x92CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x9302627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0xA2B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16962== by 0x695D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16962== by 0x695D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16962== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16962== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16962== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16962== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16962== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16962== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==16962== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16962== Open file descriptor 8: ==16962== at 0x904E2BB: pipe2 (syscall-template.S:120) ==16962== by 0xD882F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD885579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD885774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD8818AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD7E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD7E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD6F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0x92CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x9302627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0xA2B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16962== by 0x695D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16962== by 0x695D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16962== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16962== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16962== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16962== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16962== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16962== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==16962== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16962== Open file descriptor 7: ==16962== at 0x904E2BB: pipe2 (syscall-template.S:120) ==16962== by 0xD882F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD885579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD885774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD8818AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD7E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD7E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD6F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0x92CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x9302627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0xA2B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16962== by 0x695D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16962== by 0x695D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16962== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16962== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16962== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16962== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16962== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16962== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==16962== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16962== Open file descriptor 6: ==16962== at 0x905E46B: epoll_create1 (syscall-template.S:120) ==16962== by 0xD8856FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD8818AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16962== by 0xD7E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD7E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0xD6F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16962== by 0x92CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x92C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0x9302627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16962== by 0xA2B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16962== by 0x695D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16962== by 0x695D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16962== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16962== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16962== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16962== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16962== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16962== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==16962== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16962== ==16962== HEAP SUMMARY: ==16962== in use at exit: 126,384 bytes in 901 blocks ==16962== total heap usage: 1,527,677 allocs, 1,526,776 frees, 151,788,730 bytes allocated ==16962== ==16962== LEAK SUMMARY: ==16962== definitely lost: 0 bytes in 0 blocks ==16962== indirectly lost: 0 bytes in 0 blocks ==16962== possibly lost: 0 bytes in 0 blocks ==16962== still reachable: 11,909 bytes in 44 blocks ==16962== suppressed: 114,475 bytes in 857 blocks ==16962== Reachable blocks (those to which a pointer was found) are not shown. ==16962== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16962== ==16962== For lists of detected and suppressed errors, rerun with: -s ==16962== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)